- Dear Freesurfers,
My experimental design includes 2 discrete factors and 3 continuous variables:
Discrete factors:
- Diagnosis with three levels (A, B, C)
- Gender with two levels (Males, Females)
Continuous variables:
- Mean cortical
2. recon-all runs the old fixer 'mris_fix_topology', and if that fails
the euler number check, then it runs the new fixer 'mris_topo_fixer'.
of course really bad brains fail both.
n.
On Mon, 2011-01-17 at 13:56 -0500, Bruce Fischl wrote:
> Hi Ilana,
>
> 1. This is usually because of big topologic
Hi Ilana,
1. This is usually because of big topological defects, in the worst case if
the cerebellum or skull are attached. Look at the end of the recon-all.log
and see what it is in the middle of doing. If it's topology fixing, check
the inflated.nofix file and see if there is a huge defect.
Hi there,
we are having two unrelated problems with a couple of files:
1. A brain running extremely slow, after initial processing. i.e. we ran
recon-all, made some edits (control points etc.) and now for some reason the
second round is taking days.
2. An error message*: ERROR: _FindFacePath: co
Hi there,
we are having two unrelated problems with a couple of files:
1. A brain running extremely slow, after initial processing. i.e. we ran
recon-all, made some edits (control points etc.) and now for some reason the
second round is taking days.
2. An error message*: ERROR: _FindFacePath: co
Hi Freesurfers,
I have a little problem: I use a linux mashine with ubuntu 10.10 and
installed freesurfer-Linux-rh9-stable-pub-v4.0.5-full.tar.gz.. Most
commands are working well (like tkmedit, tksurfer …), but I have a
problem to get an analyse gui with (mkanalysis-sess -gui). I just get a
long e
Hi,
I've done some statistics on thickness and volume
of the default cortical regions (segIDs 1000 - 1035
and 2000 - 2035) for a number of subjects.
How can I show for instance the p values
(expressed as -log(p)) as an overlay on the pial
surface of fsaverage?
Ed