t;>image number1 (might be not reliable)
>>> transfer syntax UID 1.2.840.10008.1.2.1
>>> Acquisition parameters
>>>echo time 25
>>>repetition time 3000
>>>inversion time n
p.s. or you could use mris_curvature -w ... to create one directly
On Fri,
19 Mar 2010, Raghav Puranmalka wrote:
> So, I have figured out how to read the surface file into matlab - I
> first convert the surf file to ascii using mri_convert and then use the
> read_asc matlab code.
>
> When trying
why not just combine the curv files in the same way and create a new one?
On
Fri, 19 Mar 2010, Raghav Puranmalka wrote:
> So, I have figured out how to read the surface file into matlab - I
> first convert the surf file to ascii using mri_convert and then use the
> read_asc matlab code.
>
> When
nversion time not found
> >echo number 1
> >flip angle 1.5708
> >bits allocated 16
> > Spatial information
> >first image position-1027.46 -12.1727 952.833
&
n
> >first image position -1027.46 -12.1727 952.833
> >last image position -1027.46 -12.1727 952.833
> >image orientation 1 0 0 0 -0.00174528 -0.98
> > -
> >
> > TR=3000.00, TE=
So, I have figured out how to read the surface file into matlab - I
first convert the surf file to ascii using mri_convert and then use the
read_asc matlab code.
When trying to visualize this though, I run into the issue where the
curv file and surf file have different dimensions.
Is there any
; Reslicing using trilinear interpolation
> MRIresample(): error inverting matrix; determinant is nan, matrix is:
> -2.133 -0.000 nan nan;
> -0.000 0.004 nan nan;
> 0.000 -2.133 nan nan;
> 0.000 0.000 0.000 1.000;
> -- next part --
> A
Kelly,
I believe they are in Talairach space. Information on how to get them in
MNI space is located here:
http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg10038.html
Allison
--
On Fri, 19 Mar 2010, Kelly Silva wrote:
Hello,
I would like to know if the output coordinates
Hello,
I've been trying to use mri_convert
(freesurfer-Darwin-tiger-stable-pub-v3.0.3) to reconstruct images from our
Siemens Magnetom Trio. When I type:
mri_convert -it siemens_dicom -ot analyze4d DB_A0A1_318.MR.BECK-PAIGE_
A0A1_INHABITION.0003.0001.2010.03.18.16.34.50.50.21615932.IMA Block1
Hello,
I would like to know if the output coordinates from the "mri_surfcluster"
command is on the MNI space or on the Talairach.
Thanks in advance.
Best, Kelly
Hi Hannah,
I'm not sure I know what you mean. Do you have a label on each subject?
If so it will look for it in the subjects label directory. As for the
second issue, that sounds like a bug. If you want to send us the subject
directory we'll fix it.
cheers
Bruce
On Fri, 19 Mar 2010, Bruehl, H
Hi Hannah,
mris_anatomical_stats computes anatomical properties. To map the label, I
think you can use mri_label2label.
Sita.
On Fri, 19 Mar 2010, Bruehl, Hannah wrote:
>
> Hi there,
>
> I have got 2 questions:
>
> 1) is there way to use mris_anatomical_stats to map back the label I have
>
mri_cc takes a '-t ' parameter, which is 2 by default (meaning
the cc goes out 2 slices in either direction from the midline). Run it
with -t 5 and it should do what you want
On Fri, 19 Mar 2010, Gonzalo Rojas wrote:
Hi:
How can I get the volumetry of the corpus callosum in only some
sagit
Hi:
How can I get the volumetry of the corpus callosum in only some
sagital slices ?... For example, 5 slices to the left and 5 to the right
the medial line ?...
Sincerely,
Gonzalo Rojas Costa
Laboratory for Advanced Medical Image Processing
Department of Radiology
Clínica Las Condes
Lo
There was no picture attached. There was a zip with 3 jpgs, but I could
only display one of them.
doug
Alex Fornito wrote:
>
> Hi all,
> Sorry if this is a re-post, but I’m not sure if the first one got through.
>
> I’m really stuck on a problem I was hoping to get help with.
>
> I’m having trou
Hi there,
I have got 2 questions:
1) is there way to use mris_anatomical_stats to map back the label I have
created onto all the subjects in my directory simultaneously? I know there is
the "--subject" option but how do I then specify the directory for each
individual subject?
2) I tried to
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