Re: [Freesurfer] recon-all error (sample tutorial data)

do you have zcat installed? How much RAM is in your machine? On Thu, 17 Dec 2009, Hui J Yu wrote: > Dear freesurfer users, > > I have recently downloaded freesurfer (virtualbox verion) and started testing > using the sample data bert. I got the following error (I also tried on my > data and th

[Freesurfer] recon-all error (sample tutorial data)

Dear freesurfer users, I have recently downloaded freesurfer (virtualbox verion) and started testing using the sample data bert. I got the following error (I also tried on my data and the same error occured). Any suggestions? FINAL ITERATIVE TEMPLATE DEFORMATION Compute Lo

[Freesurfer] Announcement: Colin dataset download

Please find the download information in the following wiki-page -- http://surfer.nmr.mgh.harvard.edu/fswiki/Colin27 Thanks Krish ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] lGI error (error with class.m function)

Hi Frédéric, Do you have the matlab image processing toolbox installed? Cheers, Marie On 17 déc. 09, at 12:03, Frédéric Andersson wrote: > Hi, > > I've got some troubles computing the lGI. > It seems to be a trouble related to the class.m and strel.m matlab > functions. > > Does anyone meet s

Re: [Freesurfer] fsaverage to mni152

That is the command that I would use. Make sure your activation map actually lines up with the MNI152 brain found in FSL. dopug Yigal Agam wrote: > Hi Doug, > > Returning to this old thread: I'm doing what you said and getting > weird results (activation not where I think it should be): > > mri

Re: [Freesurfer] Graphics Card Question

That will certainly be up to spec if they work at all in Linux. We have had lots of issues dealing ATI video driver support in LInux and so have standardized completely on NVIDIA cards for any machines we buy at the Martinos Center. Dealing with all proprietary drivers for video cards like ATI a

[Freesurfer] Graphics Card Question

Dear all I am new to FreeSurfer and would apprechiate some advice. I am about to purchase a graphics card specifically to use Free Surfer due to the nature of the desk top I have I am restricted in my choice of options. I have been recommended the ATI Radeon HD3450 and HD3470: http://accessorie

Re: [Freesurfer] fsaverage to mni152

Hi Doug, Returning to this old thread: I'm doing what you said and getting weird results (activation not where I think it should be): mri_vol2vol --mov --targ --inv --reg $FREESURFER_HOME/average/mni152.register.dat --o --no-save-reg Can you give an example of the command you would use? T

[Freesurfer] lGI error (error with class.m function)

Hi, I've got some troubles computing the lGI. It seems to be a trouble related to the class.m and strel.m matlab functions. Does anyone meet such problem? Thanks Frederic gray.local:andersson 11:50am [12] recon-all -s MNI_SINGLESUBJ -localGI -no-isrunning INFO: FreeSurfer build sta