There should be multiple contrasts, one of the contrasts should be for
group1, one for group2, and one for the difference (may be
more). Sorry, I can't remember what names they are called off the top
of my head. There will be an Xg.dat file with the design matrix to
show which regressor is which
On Wednesday 29 October 2008 22:10:15 hashiryu wrote:
> Dear all,
>
> I have installed the version 4.1.0 (centos x86_64) on Ubuntu 8.04 and tried
> the test commands for tkmedit and tksurfer as in "Testing your FreeSurfer
> installation. However, the graphics "flashed" when I typed the command and
Dear all,
I have installed the version 4.1.0 (centos x86_64) on Ubuntu 8.04 and tried
the test commands for tkmedit and tksurfer as in "Testing your FreeSurfer
installation. However, the graphics "flashed" when I typed the command and
then disappeared. There was no error message on the terminal. T
When I look in the contrast folder, there is only one gamma.mgh image, but I
have two groups. I am assuming this is the mean thickness, or the mean
difference in thickness between groups. How do I get it to save out one file
for each group? Where is there a good explanation of the output files
Ryan,
There is a sample subject named 'bert' included with freesurfer in the
freesurfer/subjects dir that you could view to get an idea of a valid
parcellation.
Nick
On Wed, 2008-10-29 at 11:10 -0400, Ryan Scotton wrote:
> Hi Doug,
>
> I have reconned many subjects; the problem is that these su
Hi Doug,
I have reconned many subjects; the problem is that these subjects are 2-4
year olds and the scans do not always turn out ideally. It's hard for me to
determine which of them contains a 'perfect' parcellation, which is why I
was hoping I could use some sort of atlas template image that ha
Dear all,
I compared the mean curvature between two groups using the mri_glmfit
command and the Monte carlo simulation. Is there a possibility to
extract the smoothed average curvature values of the significant
clusters for all subjects?
Thank you in advance
Best regards
Christoph Schultz
Uni
