Ryan, There is a sample subject named 'bert' included with freesurfer in the freesurfer/subjects dir that you could view to get an idea of a valid parcellation.
Nick On Wed, 2008-10-29 at 11:10 -0400, Ryan Scotton wrote: > Hi Doug, > > I have reconned many subjects; the problem is that these subjects are > 2-4 year olds and the scans do not always turn out ideally. It's hard > for me to determine which of them contains a 'perfect' parcellation, > which is why I was hoping I could use some sort of atlas template > image that has already been parcellated appropriately in order to get > the best idea of where each label lies. Is this an option? > > Ryan > > On Fri, Oct 24, 2008 at 12:26 PM, Doug Greve > <[EMAIL PROTECTED]> wrote: > If you've reconned a subject, you can use the aparc+aseg.mgz > volume. > > doug > > Ryan Scotton wrote: > > Hi Freesurfers, > > > > Some associates of mine are working on a pipeline that > > generates cortical parcellations and we are looking to > > compare its measurements to some measurements generated by > > the freesurfer pipeline. However, our pipeline parcellates > > broader regions which include several labels generated by > > the FS cortical parcellation process within each of our > > labels. What we need is to get a general idea of where > > every label generated by FS fits within the context of our > > broader labeling scheme. > > > > SO, this may be an obvious question, but how might i be able > > to view an atlas image volume with the FS > > parcellation/labeling scheme applied to it in order to get a > > general idea of how the separate labeling schemes match up? > > > > Thanks! > > > > Ryan > > > > > > ____________________________________________________________ > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > [EMAIL PROTECTED] > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > In order to help us help you, please follow the steps in: > surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
