Re: [Freesurfer] Re: Qdec error

2008-06-16 Thread Nick Schmansky
Ming, Can you send me the output of: uname -a and then do this: setenv DYLD_PRINT_LIBRARIES 1 qdec and send me that output? The /pubsw's in the otool output (ldd doesnt exist on the mac, you're probably using a wrapper supplied in matlab) do not indicate which library is actually loading. th

Re: [Freesurfer] tkmedit --> tksurfer (tkmedit points not being saved)

2008-06-16 Thread Bruce Fischl
the points are stored in the subject's tmp/edit.dat dir. Does that file exist? Is there any error in either of the terminal windows? On Mon, 16 Jun 2008, Aaron Shmookler wrote: Although new to Freesurfer, I have in the past been able to save points on tkmedit and bring them up on an inflated

[Freesurfer] Re: Qdec error

2008-06-16 Thread Ming Hsu
Hi Nick, I just upgraded to the new version -- freesurfer-Darwin-tiger-i686-stable-pub-v4.0.5, and it seems now that I can't start qdec at all. The only error returned is "Bus error". I ran the ldd command again and there were still the links to files in /pubsw/... BTW, I'm running this on a Ma

[Freesurfer] tkmedit --> tksurfer (tkmedit points not being saved)

2008-06-16 Thread Aaron Shmookler
Although new to Freesurfer, I have in the past been able to save points on tkmedit and bring them up on an inflated tksurfer image. However, now this is not happening. When I click on Save Point or go to Tools>Save Point in tkmedit, no coordinates are brought up in the tkmedit Terminal window. So

Re: [Freesurfer] Prob:Software Download Tiger version \

2008-06-16 Thread Nick Schmansky
Liat, You can ignore the 'leopard' text in the package name, that is just a directory name of the temporary package directory. Once its installed, you can confirm you have the right version by typing: cat $FREESURFER_HOME/build-stamp.txt Nick On Mon, 2008-06-16 at 13:16 -0400, Liat Levita wro

Re: [Freesurfer] Prob:Software Download Tiger version \

2008-06-16 Thread Liat Levita
Hi Nick, when it starts downloading you can see it as tiger - but when it finally uploads the package is labeled -freesurfer-Darwin-leopard-full.pkg, which seems very odd. L p.s. I will try wget. Just need to install it on my machine. - Original Message - From: Nick Schmansky <[EMAIL

Re: [Freesurfer] Prob:Software Download Tiger version \

2008-06-16 Thread Nick Schmansky
Liat, I am unable to recreate what you are seeing. When I click on the 'freesurfer-Darwin-tiger-ppc-stable-pub-v4.0.5-full.dmg' link (albeit on a Linux machine), it downloads that filename. You could try: wget ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer-Darwin-tiger-ppc-stable-pub-v4.0

[Freesurfer] Prob:Software Download Tiger version \

2008-06-16 Thread Liat Levita
Hi, I am trying to download the updated FreeSurfer - Mac OS X Tiger (10.4.11) PowerPC stable v4.0.5 15 June 2008 - freesurfer-Darwin-tiger-ppc-stable-pub-v4.0.5-full.dmg However, when I do so I keep getting the zipped Leopard package. I wonder if something is wrong with the link to the