Simon:
If you are running a bunch of cases and then want to do basic visual
inspection QA, it can be helpful to script tkmedit and tksurfer to generate
screen caps at various angles and positions which you can then view rapidly.
I've just posted some sample scripts to do this:
https://surfer
look for the accuracy of the ?h.white and ?h.pial surfaces, and the
aseg.mgz boundaries
On Wed, 2 Jan 2008, Simon Rushton wrote:
Any tips regarding how to do the visual inspection, ie what to look at, and
what to look for?
simon
On 2 Jan 2008, at 11:05PM, Bruce Fischl wrote:
your concern i
Any tips regarding how to do the visual inspection, ie what to look
at, and what to look for?
simon
On 2 Jan 2008, at 11:05PM, Bruce Fischl wrote:
your concern isn't misplaced. We *always* visually inspect every
dataset. It's just that things work so frequently now that we don't
stop in
your concern isn't misplaced. We *always* visually inspect every dataset.
It's just that things work so frequently now that we don't stop in the
middle to do so anymore.
Bruce
On Wed, 2 Jan 2008, Simon Rushton wrote:
I feel somewhat uneasy simply assuming that the process worked just because
I feel somewhat uneasy simply assuming that the process worked just
because it didn't exit with an error. Is my concern misplaced?
Should I feel happy about submitting a ms based on freesurfer analyses
that have not been independently checked?
If it is necessary/advisable to do some indep
The tutorial is here (it's 2 pages, be sure to click 'next'):
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/OutputData
Allison
On Wed, 2 Jan 2008, Bruce Fischl wrote:
Hi,
we don't usually stop and check anymore as things fail pretty rarely. You can
look at the tutorial on the wiki for
Hi,
we don't usually stop and check anymore as things fail pretty rarely. You
can look at the tutorial on the wiki for examples of the types of failures
and how to fix them.
cheers,
Bruce
On
Wed, 2 Jan 2008, Feng-Xian Yan wrote:
Hi,
I have some confusion. When I completely run the comma
Hi,
we are buying a new Computer for running Freesurfer, FSL etc.
After my experience, that a 3 GHz xeon 5050 was running slower than a 1.6 GHz
Xeon 5110, due to older processor architecture, i wanna be sure to buy the
right one.
Does somebody has an experience with a Xeon E 5345, 2.66 GHz ?
I
Hi,
I met the problem of "Deflate compression support is not configured. TiffWrite:
TIFFWriteScanline returned error" when I used mris_make_template. Currently I
use libtiff4 for tiff interface and zlib1g for deflate compression. In
addition, I linked libtiff.so.3 to libtiff.so.4. I also teste
