Folks:
We're wondering about how FS's "folding index" corresponds to Van Essen's
calculation (J Neurosci, 1997 Sept 15).
In particular, do the FI values for each region factor out the area of the
region or not. When we plot them the FI values look extremely correlated
to area, but that does
Hi Corey,
I just ran selxav3,
Check my log and output dir (both dof and mask.nii are created), it looks
fine.
pratap
[galen:bold] (nmr-std-env) cd VvI_MK_Analysis/
[galen:VvI_MK_Analysis] (nmr-std-env) LS
acfsegLUT.txt allvfix doffsnr.nii fwhm.sum h.nii
mask.nii omnibu
Jenifer,
You can use the newer fsl with freesurfer. In fact, the fsl included
with freesurfer is a subset of the whole fsl package, so it can be
deleted. That is, do this:
cd $FREESURFER_HOME
rm -Rf fsl (or mv it)
ln -s /usr/local/fsl fsl
and then freesurfer will use your new fsl insta
Hi all,
I'm running into some problems using the selxavg3-sess command. Previously I
ran into a memory issue with matlab while running this command. However, when I
run the selxavg-sess command, the analysis completes successfully. This wasn't
an issue until I started averaging subjects. It
I'm considering downloading and installing fsl_v402 (centos4, 64 bit)
I currently have a stable freesurfer_v401 and MNE _v252 on the same
workstation.
Should the destination directory of the fsl package overwrite the
existing directory: /usr/local/freesurfer/fsl
Or should I maintain separat
Hi Bruce,
Thanks, that would be perfect!
I tried increasing the number of smoothing iterations in mris_smooth,
and this improves the result, but this is probably not the best way to
do it.
We would be very happy if you could send us a beta version of your
smoothing tools.
Cheers,
Kim.
2007/11
Hi Kim,
we do have some tools for smoothing the hippocampal surfaces, but we
haven't distributed them. I could try to get you a beta version if you
like.
cheers,
Bruce
On Fri, 16 Nov 2007, Kim Mouridsen wrote:
Hi Nick,
The Freesurfer version I use has build stamp
freesurfer-Darwin-tiger-i6
Hi Nick,
The Freesurfer version I use has build stamp
freesurfer-Darwin-tiger-i686-stable-pub-v4.0.1
After conversion, read_asc.m doesn't work - seemingly due to a
dimension problem. In the code I see that 5 elements are expected for
faces and indicies, whereas only 4 elements are provided in the
