Hi Corey,
I just ran selxav3,
Check my log and output dir (both dof and mask.nii are created), it looks
fine.
pratap
[galen:bold] (nmr-std-env) cd VvI_MK_Analysis/
[galen:VvI_MK_Analysis] (nmr-std-env) LS
acfsegLUT.txt allvfix dof fsnr.nii fwhm.sum h.nii
mask.nii omnibus rho1.nii rvar.nii
acfseg.nii beta.nii fsnr2.nii fwhm.dat h.dat h-offset.nii
meanfunc.nii rho1mn.nii rstd.nii X.mat
[galen:VvI_MK_Analysis] (nmr-std-env) more dof
86
Log:
[galen:S4_HR_LR18VvI] (nmr-std-env) selxavg3-sess -s rfa0413 -analysis
VvI_MK_Analysis/ -overwrite
--------------------------------------------------------------
selxavg3-sess logfile is
/autofs/space/galen_002/users/carl/S4_HR_LR18/S4_HR_LR18VvI/log/selxavg3-sess-bold-VvI_MK_Analysis-071116130312.log
--------------------------------------------------------------
-------------------------------------------
/autofs/space/galen_002/users/carl/S4_HR_LR18/S4_HR_LR18VvI/rfa0413
Fri Nov 16 13:03:13 EST 2007
anadir =
/autofs/space/galen_002/users/carl/S4_HR_LR18/S4_HR_LR18VvI/rfa0413/bold/VvI_MK_Analysis
------------------------------------------
------- matlab output --------------------
Warning: Unable to open display iconic, MATLAB is starting without a display.
You will not be able to display graphics on the screen.
Warning:
MATLAB is starting without a display, using internal event queue.
You will not be able to display graphics on the screen.
< M A T L A B >
Copyright 1984-2005 The MathWorks, Inc.
Version 7.1.0.183 (R14) Service Pack 3
August 02, 2005
To get started, type one of these: helpwin, helpdesk, or demo.
For product information, visit www.mathworks.com.
>> >> >> >> >> >> >> /usr/local/freesurfer/stable4/fsfast/toolbox/fast_selxavg3.m
>> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> $Id: fast_selxavg3.m,v
1.55.2.1 2007/09/27
15:25:58 greve Exp $
outtop = /autofs/space/galen_002/users/carl/S4_HR_LR18/S4_HR_LR18VvI
Extension format = nii
UseFloat = 0
INFO: acfbins is not set, setting to 10
INFO: mask is not set, setting to brain
Loaded
/autofs/space/galen_002/users/carl/S4_HR_LR18/S4_HR_LR18VvI/rfa0413/bold/014/VvI8.para
as a par2 file.
nruns = 1
autostimdur = 1
outanadir =
/autofs/space/galen_002/users/carl/S4_HR_LR18/S4_HR_LR18VvI/rfa0413/bold/VvI_MK_Analysis
Found 56169/143360 (39.2) voxels in mask
Creating Design Matrix
Loaded
/autofs/space/galen_002/users/carl/S4_HR_LR18/S4_HR_LR18VvI/rfa0413/bold/014/VvI8.para
as a par2 file.
ntptot = 100, nX = 14, DOF = 86
XCond = 226.263 (normalized)
Computing compensation for resdual AR1 bias
1 -0.5 -0.532209 (t=0.017135)
2 -0.25 -0.318684 (t=0.02182)
3 0 -0.120952 (t=0.02537)
4 0.25 0.0508019 (t=0.028981)
5 0.5 0.176664 (t=0.03252)
AR1 Correction M: 0.20632 1.38585
Computing contrast matrices
Loaded
/autofs/space/galen_002/users/carl/S4_HR_LR18/S4_HR_LR18VvI/rfa0413/bold/014/VvI8.para
as a par2 file.
1 omnibus J= 8 eff = 1.4 vrf = 10.9642 vrfffx = 10.9642 r = 1.00
Loaded
/autofs/space/galen_002/users/carl/S4_HR_LR18/S4_HR_LR18VvI/rfa0413/bold/014/VvI8.para
as a par2 file.
2 allvfix J= 1 eff = 0.8 vrf = 0.7544 vrfffx = 0.7544 r = 1.00
OLS Beta Pass
run 1 t= 0.0
Loaded
/autofs/space/galen_002/users/carl/S4_HR_LR18/S4_HR_LR18VvI/rfa0413/bold/014/VvI8.para
as a par2 file.
Global In-Mask Mean = 691.858
Rescale Target = 100
RescaleFactor = 0.144538
OLS Residual Pass
run 1 t= 0.0
Loaded
/autofs/space/galen_002/users/carl/S4_HR_LR18/S4_HR_LR18VvI/rfa0413/bold/014/VvI8.para
as a par2 file.
Whitening
Computing whitening matrices
seg 1 5617 nrho1 = -0.031 (t= 0.0)
seg 2 5617 nrho1 = 0.105 (t= 0.1)
seg 3 5617 nrho1 = 0.186 (t= 0.1)
seg 4 5617 nrho1 = 0.254 (t= 0.1)
seg 5 5617 nrho1 = 0.318 (t= 0.1)
seg 6 5617 nrho1 = 0.382 (t= 0.2)
seg 7 5617 nrho1 = 0.451 (t= 0.2)
seg 8 5617 nrho1 = 0.529 (t= 0.2)
seg 9 5617 nrho1 = 0.625 (t= 0.2)
seg 10 5616 nrho1 = 0.794 (t= 0.2)
GLS Beta Pass
run 1 t= 0.0
Loaded
/autofs/space/galen_002/users/carl/S4_HR_LR18/S4_HR_LR18VvI/rfa0413/bold/014/VvI8.para
as a par2 file.
GLS Residual Pass
run 1 t= 0.0
Loaded
/autofs/space/galen_002/users/carl/S4_HR_LR18/S4_HR_LR18VvI/rfa0413/bold/014/VvI8.para
as a par2 file.
Found 0 zero-valued voxels
Computing contrasts
Starting contrasts
omnibus J=8 -------------
Computing CES Magnitude
allvfix J=1 -------------
Saving h.dat to
/autofs/space/galen_002/users/carl/S4_HR_LR18/S4_HR_LR18VvI/rfa0413/bold/VvI_MK_Analysis/h.dat
>> >> >> >> ------------------------------------------
-------------------------------------------
Computing FWHM
-------------------------------------------
/autofs/space/galen_002/users/carl/S4_HR_LR18/S4_HR_LR18VvI/rfa0413
Fri Nov 16 13:03:45 EST 2007
/autofs/space/galen_002/users/carl/S4_HR_LR18/S4_HR_LR18VvI
mri_concat
/autofs/space/galen_002/users/carl/S4_HR_LR18/S4_HR_LR18VvI/rfa0413/bold/VvI_MK_Analysis/res/res-001.nii
--o
/autofs/space/galen_002/users/carl/S4_HR_LR18/S4_HR_LR18VvI/rfa0413/bold/VvI_MK_Analysis/res/all.nii
ninputs = 1
Checking inputs
nframestot = 100
Allocing output
Writing to
/autofs/space/galen_002/users/carl/S4_HR_LR18/S4_HR_LR18VvI/rfa0413/bold/VvI_MK_Analysis/res/all.nii
/autofs/space/galen_002/users/carl/S4_HR_LR18/S4_HR_LR18VvI
mri_fwhm --mask
/autofs/space/galen_002/users/carl/S4_HR_LR18/S4_HR_LR18VvI/rfa0413/bold/VvI_MK_Analysis/mask.nii
--i
/autofs/space/galen_002/users/carl/S4_HR_LR18/S4_HR_LR18VvI/rfa0413/bold/VvI_MK_Analysis/res/all.nii
--sum
/autofs/space/galen_002/users/carl/S4_HR_LR18/S4_HR_LR18VvI/rfa0413/bold/VvI_MK_Analysis/fwhm.sum
--dat
/autofs/space/galen_002/users/carl/S4_HR_LR18/S4_HR_LR18VvI/rfa0413/bold/VvI_MK_Analysis/fwhm.dat
voxelvolume 39.0625 mm3
Loading mask
/autofs/space/galen_002/users/carl/S4_HR_LR18/S4_HR_LR18VvI/rfa0413/bold/VvI_MK_Analysis/mask.nii
Search region is 56169 voxels = 2194101.776768 mm3
Polynomial detrending, order = 0
Detrending
Computing spatial AR1 in volume.
fMRIspatialAR1(): hit 45829 voxels
ar1mn = (0.636386,0.628951,0.386435)
colfwhm = 5.473086
rowfwhm = 5.403290
slicefwhm = 4.829978
outfwhm = 5.243374
reselvolume 142.835345
nresels 15361.056290
nvoxperresel 3.656584
Copying h.dat
cp
/autofs/space/galen_002/users/carl/S4_HR_LR18/S4_HR_LR18VvI/rfa0413/bold/VvI_MK_Analysis/h.dat
VvI_MK_Analysis
Started at Fri Nov 16 13:03:12 EST 2007
Ended at Fri Nov 16 13:03:51 EST 2007
selxavg3-sess completed
> Hi all,
>
> I'm running into some problems using the selxavg3-sess command.
> Previously I
> ran into a memory issue with matlab while running this command. However,
> when I
> run the selxavg-sess command, the analysis completes successfully. This
> wasn't
> an issue until I started averaging subjects. It appears that selxavg-sess
> doesn't create the dof and mask and other files needed for the
> isxconcat-sess
> command. Any suggestions? Thanks. Below is my code for selxavg3-sess
> and
> selxavg-sess.
>
> Best,
> Corey
>
>
> SELXAVG3
>
> dgow:jsegawa[134] selxavg3-sess -sf sessid03 -df sesspar -analysis
> simple_v_complex -overwrite
> --------------------------------------------------------------
> selxavg3-sess logfile is
> /autofs/space/multnomah_003/users/gow/PROZ06/StudyDir/log/selxavg3-sess-bold-sim
> ple_v_complex-071116113229.log
> --------------------------------------------------------------
> -------------------------------------------
> /autofs/space/multnomah_003/users/gow/PROZ06/MRI/PROZ06003
> Fri Nov 16 11:32:29 EST 2007
> anadir =
> /autofs/space/multnomah_003/users/gow/PROZ06/MRI/PROZ06003/bold/simple_v_complex
> analysis simple_v_complex alread exists for PROZ06003
> ... reanalyzing (deleting old analysis)
> ------------------------------------------
> ------- matlab output --------------------
> Warning: Unable to open display iconic, MATLAB is starting without a
> display.
> You will not be able to display graphics on the screen.
> Warning:
> MATLAB is starting without a display, using internal event queue.
> You will not be able to display graphics on the screen.
>
>
> < M A T L A B >
> Copyright 1984-2005 The MathWorks, Inc.
> Version 7.1.0.183 (R14) Service Pack 3
> August 02, 2005
>
>
> To get started, type one of these: helpwin, helpdesk, or demo.
> For product information, visit www.mathworks.com.
>
> Adding MNE Toolbox...
>>> >> >> >> >> >> >>
> /usr/local/freesurfer/stable4/fsfast/toolbox/fast_selxavg3.m
>>> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> $Id: fast_selxavg3.m,v
> 1.55.2.1 2007/09/27 15:25:58 greve Exp $
> outtop = /autofs/space/multnomah_003/users/gow/PROZ06/MRI
> Extension format = nii
> UseFloat = 0
> INFO: acfbins is not set, setting to 10
> INFO: mask is not set, setting to brain
> 1 allvres.mat
> 2 omnibus.mat
> 3 zallvres.mat
> 4 zomnibus.mat
> Loaded
> /autofs/space/multnomah_003/users/gow/PROZ06/MRI/PROZ06003/bold/010/parfile1.par
> as a par2 file.Ignoring duration for FIR model
> Ignoring duration for FIR model
> nruns = 3
> autostimdur =
>
>
> outanadir =
> /autofs/space/multnomah_003/users/gow/PROZ06/MRI/PROZ06003/bold/simple_v_complex
> Found 41527/110592 (37.5) voxels in mask
> Creating Design Matrix
> Loaded
> /autofs/space/multnomah_003/users/gow/PROZ06/MRI/PROZ06003/bold/010/parfile1.par
> as a par2 file.Ignoring duration for FIR model
> Ignoring duration for FIR model
> Loaded
> /autofs/space/multnomah_003/users/gow/PROZ06/MRI/PROZ06003/bold/011/parfile1.par
> as a par2 file.Ignoring duration for FIR model
> Ignoring duration for FIR model
> Loaded
> /autofs/space/multnomah_003/users/gow/PROZ06/MRI/PROZ06003/bold/012/parfile1.par
> as a par2 file.Ignoring duration for FIR model
> Ignoring duration for FIR model
> ntptot = 1242, nX = 24, DOF = 1218
> XCond = 56.8839 (normalized)
> Computing compensation for resdual AR1 bias
> 1 -0.5 -0.493483 (t=16.1468)
> 2 -0.25 -0.248851 (t=46.0564)
> 3 0 -0.00487321 (t=48.3458)
> 4 0.25 0.237796 (t=78.3629)
> 5 0.5 0.477198 (t=94.7002)
> AR1 Correction M: 0.00663368 1.02963
> Computing contrast matrices
> Loaded
> /autofs/space/multnomah_003/users/gow/PROZ06/MRI/PROZ06003/bold/010/parfile1.par
> as a par2 file.Ignoring duration for FIR model
> Ignoring duration for FIR model
> Loaded
> /autofs/space/multnomah_003/users/gow/PROZ06/MRI/PROZ06003/bold/010/parfile1.par
> as a par2 file.Ignoring duration for FIR model
> Ignoring duration for FIR model
> Loaded
> /autofs/space/multnomah_003/users/gow/PROZ06/MRI/PROZ06003/bold/010/parfile1.par
> as a par2 file.Ignoring duration for FIR model
> Ignoring duration for FIR model
> 1 allvres J= 9 eff = 7.7 vrf = 69.6671 vrfffx = 69.2443 r =
> 1.01
> Loaded
> /autofs/space/multnomah_003/users/gow/PROZ06/MRI/PROZ06003/bold/010/parfile1.par
> as a par2 file.Ignoring duration for FIR model
> Ignoring duration for FIR model
> Loaded
> /autofs/space/multnomah_003/users/gow/PROZ06/MRI/PROZ06003/bold/010/parfile1.par
> as a par2 file.Ignoring duration for FIR model
> Ignoring duration for FIR model
> Loaded
> /autofs/space/multnomah_003/users/gow/PROZ06/MRI/PROZ06003/bold/010/parfile1.par
> as a par2 file.Ignoring duration for FIR model
> Ignoring duration for FIR model
> 2 omnibus J=18 eff = 11.1 vrf = 200.1014 vrfffx = 198.7246 r =
> 1.01
> Loaded
> /autofs/space/multnomah_003/users/gow/PROZ06/MRI/PROZ06003/bold/010/parfile1.par
> as a par2 file.Ignoring duration for FIR model
> Ignoring duration for FIR model
> Loaded
> /autofs/space/multnomah_003/users/gow/PROZ06/MRI/PROZ06003/bold/010/parfile1.par
> as a par2 file.Ignoring duration for FIR model
> Ignoring duration for FIR model
> Loaded
> /autofs/space/multnomah_003/users/gow/PROZ06/MRI/PROZ06003/bold/010/parfile1.par
> as a par2 file.Ignoring duration for FIR model
> Ignoring duration for FIR model
> 3 zallvres J= 9 eff = 7.7 vrf = 69.6671 vrfffx = 69.2443 r =
> 1.01
> Loaded
> /autofs/space/multnomah_003/users/gow/PROZ06/MRI/PROZ06003/bold/010/parfile1.par
> as a par2 file.Ignoring duration for FIR model
> Ignoring duration for FIR model
> Loaded
> /autofs/space/multnomah_003/users/gow/PROZ06/MRI/PROZ06003/bold/010/parfile1.par
> as a par2 file.Ignoring duration for FIR model
> Ignoring duration for FIR model
> Loaded
> /autofs/space/multnomah_003/users/gow/PROZ06/MRI/PROZ06003/bold/010/parfile1.par
> as a par2 file.Ignoring duration for FIR model
> Ignoring duration for FIR model
> 4 zomnibus J=18 eff = 11.1 vrf = 200.1014 vrfffx = 198.7246 r =
> 1.01
> OLS Beta Pass
> run 1 t= 0.0
> Loaded
> /autofs/space/multnomah_003/users/gow/PROZ06/MRI/PROZ06003/bold/010/parfile1.par
> as a par2 file.Ignoring duration for FIR model
> Ignoring duration for FIR model
> run 2 t= 5.3
> Loaded
> /autofs/space/multnomah_003/users/gow/PROZ06/MRI/PROZ06003/bold/011/parfile1.par
> as a par2 file.Ignoring duration for FIR model
> Ignoring duration for FIR model
> run 3 t=10.4
> Loaded
> /autofs/space/multnomah_003/users/gow/PROZ06/MRI/PROZ06003/bold/012/parfile1.par
> as a par2 file.Ignoring duration for FIR model
> Ignoring duration for FIR model
> Global In-Mask Mean = 542.984
> Rescale Target = 1000
> RescaleFactor = 1.84167
> OLS Residual Pass
> run 1 t= 0.0
> Loaded
> /autofs/space/multnomah_003/users/gow/PROZ06/MRI/PROZ06003/bold/010/parfile1.par
> as a par2 file.Ignoring duration for FIR model
> Ignoring duration for FIR model
> ??? Out of memory. Type HELP MEMORY for your options.
>
> Error in ==> fast_selxavg3 at 417
> rho1run = sum(rrun(1:end-1,:).*rrun(2:end,:))./rsserun;
>
>>> ------------------------------------------
> ERROR: fast_selxavg3() failed\n
>
> SELXAVG
>
> dgow:jsegawa[132] selxavg-sess -sf sessid03 -df sesspar -analysis
> simple_v_complex
> INFO: WhitenFlag = 0
> --------------------------------------------------------------
> selxavg-sess logfile is
> /autofs/space/multnomah_003/users/gow/PROZ06/StudyDir/log/selxavg-sess-bold-simp
> le_v_complex-071116111716.log
> --------------------------------------------------------------
> -------------------------------------------
> /autofs/space/multnomah_003/users/gow/PROZ06/MRI/PROZ06003
> Fri Nov 16 11:17:17 EST 2007
> INFO (PROZ06003): RunList = 010 011 012
> --------------------------------------------------------
> /autofs/space/multnomah_003/users/gow/PROZ06/MRI/PROZ06003/bold
> selxavg2 -TR 2.8000 -parname parfile1.par -o simple_v_complex/h -i 010/fmc
> -i
> 011/fmc -i 012/fmc -cfg
> /autofs/space/multnomah_003/users/gow/PROZ06/StudyDir/simple_v_complex/analysis.
> cfg -ipr 3.125 -pomnibus simple_v_complex/omnibus/fsig -fomnibus
> simple_v_complex/omnibus/f
> --------------------------------------------------------
> here
> --- Parsing Config File:
> /autofs/space/multnomah_003/users/gow/PROZ06/StudyDir/simple_v_complex/analysis.
> cfg ----
> -timewindow 25.2 -prestim 0 -polyfit 1 -TER 2.8 -nskip 0 -fwhm 0 -rescale
> 1000
> Logfile is simple_v_complex/h_sxa.log
> matlab file is /tmp/sxa_31431.m
> ----------- Matlab file --------------
> % Matlab file for selxavg2 Fri Nov 16 11:17:21 EST 2007
> % This file may be deleted
> % /tmp/sxa_31431.m
> global QuitOnError;
> QuitOnError = 1;
> r = fast_selxavg( '-TR', '2.8000', '-parname', 'parfile1.par', '-o',
> 'simple_v_complex/h', '-i', '010/fmc', '-i', '011/fmc', '-i', '012/fmc',
> '-cfg',
> '/autofs/space/multnomah_003/users/gow/PROZ06/StudyDir/simple_v_complex/analysis
> .cfg', '-ipr', '3.125', '-pomnibus', 'simple_v_complex/omnibus/fsig',
> '-fomnibus', 'simple_v_complex/omnibus/f');
> if(r==0)
>
> fmri_touch('/autofs/space/multnomah_003/users/gow/PROZ06/MRI/PROZ06003/bold/simp
> le_v_complex/selxavg.ok.31431');
> end
> qoe;
>
> -----------------------------------
> ------------------------------------------
> ------- matlab output --------------------
> Warning: Unable to open display iconic, MATLAB is starting without a
> display.
> You will not be able to display graphics on the screen.
> Warning:
> MATLAB is starting without a display, using internal event queue.
> You will not be able to display graphics on the screen.
>
>
> < M A T L A B >
> Copyright 1984-2005 The MathWorks, Inc.
> Version 7.1.0.183 (R14) Service Pack 3
> August 02, 2005
>
>
> To get started, type one of these: helpwin, helpdesk, or demo.
> For product information, visit www.mathworks.com.
>
> Adding MNE Toolbox...
>>> >> >> >> >> >> $Id: fast_selxavg.m,v 1.40.2.1 2007/10/05 21:10:30 greve
>>> Exp $
> Parsing Arguments
> RescaleTarget = 1000
> UseMRIread = 1, ext = nii
> Checking Parameters
> nslices = 27
> AutoStimDur: 0
> StimDur:
> Number of Runs: 3
> Input Volume List
> 1 010/fmc
> 2 011/fmc
> 3 012/fmc
> Input Pardigm File List
> 1 010/parfile1.par
> 2 011/parfile1.par
> 3 012/parfile1.par
> Output Volume simple_v_complex/h
> F Omnibus Volume simple_v_complex/omnibus/f
> Sig Omnibus Volume simple_v_complex/omnibus/fsig
> TR 2.800000
> TER 2.800000
> Total Window 25.2
> PreStim Window 0
> Remove Baseline 1
> Remove Trend 0
> Remove QTrend 0
> Rescale Target 1000
> nSkip 0
> InPlane Res 3.125
> FWHM 0
> Hanning Radius 0
> Time Offset 0
> GammaFit 0
> GammaFit Alpha: 2
> SPM HRF: -1
> Seg Brain/Air 1
> SynthSeed 0
> firstslice 0
> nslices 27
> nyqreg 0
> SynthSeed = 0
> Conditions Found (2): 1 2
> Run 1: 120 120
> Run 2: 120 120
> Run 3: 120 120
> Slice 0, 5.2e-05 --------------
> First Pass (Accumulation), 0.000607
> Run 1/3, 0.001506
> Excluding 0 Points:
> Loading 010/fmc
> Run 2/3, 3.67712
> Excluding 0 Points:
> Loading 011/fmc
> Run 3/3, 6.96143
> Excluding 0 Points:
> Loading 012/fmc
> Second Pass (Residual Error Estimation), 10.0999
> Paradigm Condition: 51.2312
> Var Reduction Range: 197.495 200.118 204.056
> Computing hhat
> Run 1/3, 10.1504
> Excluding 0 Points:
> Run 2/3, 10.4904
> Excluding 0 Points:
> Run 3/3, 10.8313
> Excluding 0 Points:
> Saving offset to simple_v_complex/h-offset_000.bfloat
> INFO: performing FTest on omnibus
> NOTE: if this hangs, try running selxavg-sess
> with the -noomnibus flag.
> Using MRIread(), which can slow things down.
> Slice 1, 11.5265 --------------
> Slice 2, 13.3047 --------------
> Slice 3, 15.0746 --------------
> Slice 4, 16.8374 --------------
> Slice 5, 18.615 --------------
> Slice 6, 20.4063 --------------
> Slice 7, 22.2817 --------------
> Slice 8, 24.2111 --------------
> Slice 9, 26.0804 --------------
> Slice 10, 27.9649 --------------
> Slice 11, 29.8879 --------------
> Slice 12, 31.8154 --------------
> Slice 13, 33.7548 --------------
> Slice 14, 35.6677 --------------
> Slice 15, 37.6064 --------------
> Slice 16, 39.4877 --------------
> Slice 17, 41.5613 --------------
> Slice 18, 43.5031 --------------
> Slice 19, 45.4728 --------------
> Slice 20, 47.4043 --------------
> Slice 21, 49.4282 --------------
> Slice 22, 51.3414 --------------
> Slice 23, 53.2732 --------------
> Slice 24, 55.1614 --------------
> Slice 25, 57.0814 --------------
> Slice 26, 59.1151 --------------
> INFO: saving meta to simple_v_complex/X.mat
> Done 64.2836
>>> >> quiting matlab
> ------------------------------------------
>
>
> Fri Nov 16 11:18:35 EST 2007
> selxavg2: finished
> $Id: mkcontrast,v 1.8 2007/07/10 17:19:25 greve Exp $
> cmtxfile
> /autofs/space/multnomah_003/users/gow/PROZ06/StudyDir/simple_v_complex/allvres
> nconds 2, wcond
> ndelays 9, wdelay
> ndelays 9, wpsa
> sumconds 1
> sumdelays 0
> nircorr 0
> TER 2.8
> rdelta
> rtau
> Warning: Unable to open display iconic, MATLAB is starting without a
> display.
> You will not be able to display graphics on the screen.
> Warning:
> MATLAB is starting without a display, using internal event queue.
> You will not be able to display graphics on the screen.
>
>
> < M A T L A B >
> Copyright 1984-2005 The MathWorks, Inc.
> Version 7.1.0.183 (R14) Service Pack 3
> August 02, 2005
>
>
> To get started, type one of these: helpwin, helpdesk, or demo.
> For product information, visit www.mathworks.com.
>
> Adding MNE Toolbox...
>>> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >>>>> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >>
>>> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >>>>
>>> Normalizing contrast matrix
>>> >> >> >> >> >> >> >> $Id: mkcontrast,v 1.8 2007/07/10 17:19:25 greve
>>> Exp $
> cmtxfile
> /autofs/space/multnomah_003/users/gow/PROZ06/StudyDir/simple_v_complex/omnibus
> nconds 2, wcond
> ndelays 9, wdelay
> ndelays 9, wpsa
> sumconds 0
> sumdelays 0
> nircorr 0
> TER 2.8
> rdelta
> rtau
> Warning: Unable to open display iconic, MATLAB is starting without a
> display.
> You will not be able to display graphics on the screen.
> Warning:
> MATLAB is starting without a display, using internal event queue.
> You will not be able to display graphics on the screen.
>
>
> < M A T L A B >
> Copyright 1984-2005 The MathWorks, Inc.
> Version 7.1.0.183 (R14) Service Pack 3
> August 02, 2005
>
>
> To get started, type one of these: helpwin, helpdesk, or demo.
> For product information, visit www.mathworks.com.
>
> Adding MNE Toolbox...
>>> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >>>>> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >>
>>> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >>>>
>>> Normalizing contrast matrix
>>> >> >> >> >> >> >> >> $Id: mkcontrast,v 1.8 2007/07/10 17:19:25 greve
>>> Exp $
> cmtxfile
> /autofs/space/multnomah_003/users/gow/PROZ06/StudyDir/simple_v_complex/zallvres
> nconds 2, wcond
> ndelays 9, wdelay
> ndelays 9, wpsa
> sumconds 1
> sumdelays 0
> nircorr 0
> TER 2.8
> rdelta
> rtau
> Warning: Unable to open display iconic, MATLAB is starting without a
> display.
> You will not be able to display graphics on the screen.
> Warning:
> MATLAB is starting without a display, using internal event queue.
> You will not be able to display graphics on the screen.
>
>
> < M A T L A B >
> Copyright 1984-2005 The MathWorks, Inc.
> Version 7.1.0.183 (R14) Service Pack 3
> August 02, 2005
>
>
> To get started, type one of these: helpwin, helpdesk, or demo.
> For product information, visit www.mathworks.com.
>
> Adding MNE Toolbox...
>>> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >>>>> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >>
>>> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >>>>
>>> Normalizing contrast matrix
>>> >> >> >> >> >> >> >> $Id: mkcontrast,v 1.8 2007/07/10 17:19:25 greve
>>> Exp $
> cmtxfile
> /autofs/space/multnomah_003/users/gow/PROZ06/StudyDir/simple_v_complex/zomnibus
> nconds 2, wcond
> ndelays 9, wdelay
> ndelays 9, wpsa
> sumconds 0
> sumdelays 0
> nircorr 0
> TER 2.8
> rdelta
> rtau
> Warning: Unable to open display iconic, MATLAB is starting without a
> display.
> You will not be able to display graphics on the screen.
> Warning:
> MATLAB is starting without a display, using internal event queue.
> You will not be able to display graphics on the screen.
>
>
> < M A T L A B >
> Copyright 1984-2005 The MathWorks, Inc.
> Version 7.1.0.183 (R14) Service Pack 3
> August 02, 2005
>
>
> To get started, type one of these: helpwin, helpdesk, or demo.
> For product information, visit www.mathworks.com.
>
> Adding MNE Toolbox...
>>> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >>>>> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >>
>>> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >>>>
>>> Normalizing contrast matrix
>>> >> >> >> >> >> >> >> Started at Fri Nov 16 11:17:16 EST 2007
> Ended at Fri Nov 16 11:18:47 EST 2007
>
> COMPLETED SUCCESSFULLY
>
>
> --------------------
> Corey Keller
> Epilepsy Unit
> Clinical Research Coordinator
> Massachusetts General Hospital
> VBK 830, 55 Fruit Street
> Boston, MA 02114
>
> Phone 802.578.6292
> Email [EMAIL PROTECTED]
> [EMAIL PROTECTED]
>
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
>
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