Hi Jim,
I haven't tried this in a long time, but when I was writing the aseg
stuff I implemented something in mri_ca_label to write out the
probabilities at each step of the ICM. Run mri_ca_label with "-write_probs
"
and it will write out
sprintf(output_fname, "%s03d.mgz", fname, iteration_
Hello FreeSurfers-
At any point in the recon-all processing stream does a voxel by voxel
map of segmentation probability values get generated? If not, are that
at all obtainable through post-processing methods?
--
Jim Porter
Graduate Student
Clinical Science & Psychopathology Research
Univers
read_curv will return that also:
[thickness_vector, nfaces] = read_curv('lh.thickness') ;
I'm a bit worried that you have a dimension mismatch. That shouldn't
happen.
Bruce
On Tue, 11 Sep 2007, Juergen Haenggi,
Psychological Institute wrote:
Dear Freesurfer users
I computed ?.volume fi
Dear Freesurfer users
I computed ?.volume files by using several commands sent by Bruce. Instead
of using the save_mgh.m command, which not really worked because there was a
dimension mismatch later when using mri_concat, we used write_curv.m. I need
the number of faces in the surface to write
that type of pattern usually means you loaded the wrong hemisphere (e.g.
the lh.aparc.annot on the rh.inflated or visa versa)
On Mon, 10 Sep 2007,
Wang, Xin wrote:
the following error is reported when I run the tksurfer and load annotation. I
attach a image of parcellation.
Thank you.
Xin
-- Forwarded message --
From: Rafael Huber <[EMAIL PROTECTED]>
Date: 11.09.2007 09:19
Subject: Re: Re: [Freesurfer] Average Volume
To: Doug Greve <[EMAIL PROTECTED]>
Hy Doug,
Thank you for your help. I tried to do it with your advice, but when i
runned "mri_concat --i SUBJECTS*/s
