Emily,
mri_surf2surf should do what you need. Use the --help flag for
description and examples.
Nick
On Fri, 2006-12-01 at 15:56 -0600, Emily Cooper wrote:
> hi,
> i'm trying to map the functional data from each of my subjects into a
> common space on the surface. i have moved my volume funct
hi,
i'm trying to map the functional data from each of my subjects into a
common space on the surface. i have moved my volume functionals into
icosahedron space for two subjects and then converted to a .asc text file
but the text files show that the two datasets have a different number of
nodes (1
Hi Akram,
Can you copy one of these subjects to:
/space/tensor/14/users/jenni/testdir
and I will play with it and see what I can do - I have some scripts that
might do something.
Jenni
On Fri, 1 Dec 2006, Akram Bakkour wrote:
Hi,
I'm running everything on thigpen.
setenv SUBJECTS_DIR /sp
Hi,
I'm running everything on thigpen.
setenv SUBJECTS_DIR /space/thigpen/8/users/akram/ADNI_processing
I'm having trouble fixing the talairach of these 4 subjects: 005_S_0572
023_S_0030 116_S_0382 126_S_0405
I've tried:
mri_convert brainmask.mgz brainmask.mnc
mritotal -protocol icbm brainma
I don't think recon-all uses any sym links. I can mod the average subj
script to copy instead of link.
[EMAIL PROTECTED] wrote:
Hi Doug,
while trying to expand the volume of my virtual machine to be able to
create symbolic links I started wondering if the way I preprocessed my
data with rec
Hi Juergen,
use the mri/aseg.mgz volume. And no thickness or surface area of hippo -
just volume at the moment.
cheers,
Bruce
On Fri, 1 Dec 2006, Juergen Haenggi wrote:
Dear Freesurfer users
I tried to compute the hippocampal volume with the following command:
mri_label_volume
but whic
Hi Bogdan,
I may have missed the beginning of this conversation - so I'm not sure what
the initial problem was - but I don't think that the recon-all stream
creates any symbolic links, so everything you ran should be ok. Have you
looked at the outputs, do they look ok?
make_average_subject tri
Hi Juergen,
If you ran recon-all -all, you should have a file called aseg.stats in your
/stats directory. This will contain information (volume,
intensity) from the automatic segmentation (aseg.mgz) for all the structures
we label.
There are no surfaces generated for the hippocampus, so there
Hi Doug,
while trying to expand the volume of my virtual machine to be able to
create symbolic links I started wondering if the way I preprocessed my
data with recon_all might be affected somehow by the fact symbolic links
were not supported (the data was located on a mounted drive). The only
Dear Freesurfer users
I tried to compute the hippocampal volume with the following command:
mri_label_volume
but which is the most appropriate volume to label?
Is there also an opportunity to measure thickness and surface area of the
hippocampi?
I had run recon-all -all, but cannot find the
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