you could write a simple script to do this, something like:
#!/bin/csh -f
foreach subject (subject1 subject2 subject3)
recon-all -s $subject -autorecon1 -autorecon2
end
doug
Jake Freimer wrote:
I was wondering if it is possible to queue up various subjects like if
the computers were goin
I was wondering if it is possible to queue up various subjects like if
the computers were going to be left for several days to run autorecon1
and 2 on a subject, and when that finishes move on to the next subject
etc. If it is not possible in freesurfer has anyone written a script
that I could use
What is it exactly that you want to do? Surface-based group stat
analysis or just visualization?
doug
Thomas Stephan wrote:
Dear FSL list,
I would like to use freesurfer to render fMRI results obtained by SPM
group analysis onto
inflated surfaces of the template brain. I succeeded to do so
Although partially overlapping what you've done already the following SPM toolbox enables you to overlay your data on the SPM canonical brain (colin27), fsaverage or any other surface.Checkhttp://spmsurfrend.sourceforge.net/and for documentationhttp://spmsurfrend.sourceforge.net/Documentation/Docum
Dear FSL list,
I would like to use freesurfer to render fMRI results obtained by SPM
group analysis onto
inflated surfaces of the template brain. I succeeded to do so by
inflating the template provided
with SPM and using tkregister2 with the functional data.
Are there any recommendations for t
Darren,
The equivalent to parcellate_subject would be:
recon-all -s -cortparc -parcstats -cortparc2 -parcstats2
More info here, under autorecon3:
http://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllDevTable
Also, the surface labels are embedded in the parcellation atlas (so having
Simple_surfa
