I have put my subjects through the recon-all procedure and most ended with
no errors. But some ended with an error message, after the command line:
mri_diff aseg.auto.mgz aseg.mgz
saying:
zcat: ~/.../mri/aseg.auto.mgz: unexpected end of file
mghRead(~/.../mri/aseg.auto.mgz, -1): read error
What
Hi Eric,
Message: 1
Date: Wed, 10 May 2006 09:37:43 -0400
From: "Faden, Eric (NIH/NIMH) [F]" <[EMAIL PROTECTED]>
Subject: [Freesurfer] Skull Stripping a Macaque
To:
Message-ID:
<[EMAIL PROTECTED]>
Content-Type: text/plain; charset="iso-8859-1"
Hey all,
Is anyone using freesurfer
hmmm, not sure what's going on. If you want to tar and gzip the subject
and drop it at:
https://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
we'll take a look
On Thu, 11 May
2006, adam walczak wrote:
Well, on the asegedit volume, the parts are missing as well. So the values in
the
Well, on the asegedit volume, the parts are missing as well. So the values in the missing parts are zero. ON the brain.mgz file though the values are there and the isn't any missing part. (you are asking for the brain.mgz value, right?) Also, the ventricles on this subject's image are very larg
and how about the aseg? The wm volume is missing a big chunk of brain? What
are the white matter values in the brain.mgz volume in the missing
locations (about)?
On Thu, 11 May 2006, adam walczak wrote:
The skull stripping looks fine, but the talairach is shifted too far forward.
Bruce Fisch
The skull stripping looks fine, but the talairach is shifted too far forward.Bruce Fischl <[EMAIL PROTECTED]> wrote: check the skull stripping and talairach.On Thu, 11 May 2006, adam walczak wrote:> Hello,>> I tried to display my data in tksurfer but only half of the brain is rendered. This is stra
no, it's not. You can compute the GM volume by adding up the volumes of
the individual gm structures in the aseg.stats file (e.g. caudate,
putamen, cortex, etc).
cheers,
Bruce
On Wed, 10 May 2006, Goradia, Dhruman D wrote:
Hi all,
In the aseg.stats file there is a measurement called Brai
check the skull stripping and talairach.
On Thu, 11 May 2006, adam walczak
wrote:
Hello,
I tried to display my data in tksurfer but only half of the brain is rendered.
This is strange (obviously), because this has never happened before...all
previous times I have used tksurfer have worked
Hello, I tried to display my data in tksurfer but only half of the brain is rendered. This is strange (obviously), because this has never happened before...all previous times I have used tksurfer have worked fine. Is there any reason this might have happened? It appears as if the wm volume has
