Seems to be working now. Thanks Doug, you're a lifesaver!!
As an aside, will surfaces created using the 20050509 dev version be compatible
with those created using the upcoming stable release?
-Original Message-
From: Doug Greve [mailto:[EMAIL PROTECTED]
Sent: Th
That's due to a problem I created a few days ago. Fixes are at:
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve
doug
On Thu, 8 Sep 2005, Fornito, Alexander wrote:
Hi,
We've recently installed the freesurfer-Linux-rh9-dev20050905-full.tar.gz
distribution on our systems, which
Hi,
We've recently installed the freesurfer-Linux-rh9-dev20050905-full.tar.gz
distribution on our systems, which run Debian 3.1. I noticed that unpacking the
distribution did not place the perl5 directory in
$FREESURFER_HOME/lib/mni/lib,as the readme file says it should. I then
downloaded the m
Hi Michele,
we typically use tkregister2 or the mni register program to fix it
manually.
cheers,
Bruce
On Wed, 7 Sep 2005, Michele Perry wrote:
I ran recon-all -stage1 -nomotioncor -subjid
It exited with errors during mri_fill:
mri_fill: could not find corpus callosum
No such file or direc
I don't know why it failed, but you should try fixing it with
tkregister2 --fstal --s
then run with -notalairach
given how bad it is, you might be better starting from scratch, in which
case you should add --regheader to the cmd
doug
Michele Perry wrote:
I ran recon-all -stage1 -nomotio
I ran recon-all -stage1 -nomotioncor -subjid
It exited with errors during mri_fill:
mri_fill: could not find corpus callosum
No such file or directory
INFO: Modifying dst c_(r,a,s), using the transform dst
INFO: Modifying dst c_(r,a,s), using the transform dst
find_cutting_plane:seed point not in
Brian,
Thanks for the info. We are currently updating the installation to fix-
up the hard-coded links.
To view the subcortical segmentation results, for bert (the fully
processed sample data), type:
tkmedit -segmentation mri/aseg.mgz \
$FREESURFER_HOME/FreeSurferColorLUT.txt bert norm.mgz
Hello,
I'm trying to make an average surface using the latest version of
make_average_surface (2005/08/02 19:14:20 nicks Exp), and I got the same error
as posted in the following message:
http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg01135.html, with a
segmentation fault when m
