This is the output for the parcellate_subject:
[autologins-Computer:stem/freesurfer/subjects] wanpark% parcellate_subject cf1
reading atlas from /Users/wanpark/Desktop/FreeSurfer/freesurfer/average/lh.atlas2002_simple.gcs
reading color table from GCSA file
input 1: CURVATURE FILE, flags 0, av
Thanks,
I also ran mris_glm for thickness differences based on age of the subjects
with the following command and got the following output. Can you tell me
how to I can read the results in tksurfer?
mris_glm --design ons_glm.mtx --hemi lh --surfmeas thickness --trgsubj
average_ons -nsmooth 50 --b
Hi Keyma,
I'll leave this for Doug (or Brian).
Bruce
On Fri, 28 Jan 2005, Keyma Prince
wrote:
> Thanks,
>
> I also ran mris_glm for thickness differences based on age of the subjects
> with the following command and got the following output. Can you tell me
> how to I can read the results in
Hi Keyma,
mris_twoclass is for making maps of thickness differences, not for the
output of parcellate_subject, which you can just import into excel (using
mris_anatomical_stats -a $annot_file -b $subject $hemi. In any case,
mris_twoclass has been deprecated since Doug wrote mris_glm
cheers,
Br
Hello,
I am trying to use mri_twoclass for the first time to do a simple
comparision of means for the output from parcellate_subject(i.e. cortical
thickness and cortical volume) between 2 groups. This the command line
i'm using but I keep getting the following output:
mris_twoclass -o average7 lh
Hi Wan,
is rh.annot.aparc a directory? It shouldn't be, but it looks like it from
your log file. What machine type are you running on? Can you also send the
output of parcellate_subject?
cheers,
Bruce
On Fri, 28 Jan 2005, Wan Park wrote:
> Hi, while I am solving the problems with the cutting
Hi, while I am solving the problems with the cutting planes, I am doing parcellation with the subjects that went through.
After doing parcellate_subject cf1
I wanted to visualize it so I wrote
tksurfer cf1 rh inflated
and then I went to file>labels>annotation and wrote
/Users/../Volumes/stem/fr
