Hi Wan, is rh.annot.aparc a directory? It shouldn't be, but it looks like it from your log file. What machine type are you running on? Can you also send the output of parcellate_subject?
cheers, Bruce On Fri, 28 Jan 2005, Wan Park wrote: > Hi, while I am solving the problems with the cutting planes, I am doing > parcellation with the subjects that went through. > After doing parcellate_subject cf1 > > I wanted to visualize it so I wrote > tksurfer cf1 rh inflated > > and then I went to file>labels>annotation and wrote > > /Users/../Volumes/stem/freesurfer/subjects/cf1/label/rh.aparc.annot > > but nothing happened and this error occured: > > [autologins-Computer:stem/freesurfer/subjects] wanpark% tksurfer cf1 rh > inflated > surfer: current subjects dir: /Users/../Volumes/stem/freesurfer/subjects > surfer: not in "scripts" dir ==> using cwd for session root > surfer: session root data dir ($session) set to: > surfer: /Volumes/stem/freesurfer/subjects > surfer: /Users/../Volumes/stem/freesurfer/subjects/cf1/mri/T1/COR-.info > ltMNIread: could not open file > /Users/../Volumes/stem/freesurfer/subjects/cf1/mri/transforms/ > talairach.xfm > No such file or directory > surfer: Talairach xform file not found (ignored) > surfer: vertices=187213, faces=375476 > surfer: using interface > /Users/wanpark/Desktop/FreeSurfer/freesurfer/lib/tcl/tksurfer.tcl > Reading > /Users/wanpark/Desktop/FreeSurfer/freesurfer/lib/tcl/tkm_common.tcl > Reading > /Users/wanpark/Desktop/FreeSurfer/freesurfer/lib/tcl/tkm_wrappers.tcl > Reading > /Users/wanpark/Desktop/FreeSurfer/freesurfer/lib/tcl/fsgdfPlot.tcl > Couldn't load libtclfsgdf.dylib. > Reading /Users/wanpark/Desktop/FreeSurfer/freesurfer/lib/tcl/tkUtils.tcl > Read /Users/wanpark/Desktop/FreeSurfer/freesurfer/surface_labels.txt, > found 95 structures > Successfully parsed tksurfer.tcl > % could not read annot file > /Users/../Volumes/stem/freesurfer/subjects/cf1/label/rh.aparc.annot/ > Not a directory > surfer: WARNING: no labels imported; annotation was empty > reading colortable from annotation file... > colortable with 85 entries read (originally > /space/neo/5/recon/christophe/Simple_surface_labels2002.txt) > reading colortable from annotation file... > *** malloc_zone_calloc[1759]: arguments too large: 3221210976,520 > CTABreadFrom: could not allocate -1073756320 bin table > Cannot allocate memory > Bus error > > do you have any suggestions? > > thanks, > > wan > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
