Re: [Freesurfer] question

2004-12-23 Thread Bruce Fischl
run: mris_anatomical_stats -l area39-lh.label $subject lh where area39-lh.label is a label you draw in tksurfer. On Thu, 23 Dec 2004, Wan Park wrote: I want to calculate the gray matter volume in certain areas (eg. cortical area 39). What should I do? Thanks, Wan ___

[Freesurfer] question

2004-12-23 Thread Wan Park
I want to calculate the gray matter volume in certain areas (eg. cortical area 39). What should I do? Thanks, Wan ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

[Freesurfer] mni_perllib_0.07 installation error

2004-12-23 Thread Joongnam Yang
Happy holidays for everyone! When I was installing mni_perllib_0.07, the following error messages keep popping out and at the end installation fails. batch: error parsing command-line arguments Error closing pipe to batch: at t/batch-1.t line 36 `batch' exited with non-zero status code: 256 at

Re: [Freesurfer] wmfill error

2004-12-23 Thread Margaret Duff
check out the free surfer manual, around page 31. they show pictures and an example. use talairach or volume scanner coordinates to specify them, not volume index as it might say in the manual. margaret On Thu, 23 Dec 2004, Joongnam Yang wrote: > Thanks Margaret, > > Is there a reference on h

Re: [Freesurfer] wmfill error

2004-12-23 Thread Joongnam Yang
Thanks Margaret, Is there a reference on how to specify the corpus collosum and pons in the WMFill under Preferences->Expert Preferences in csurf? Nam. >>> Margaret Duff <[EMAIL PROTECTED]> 12/22/04 12:10 PM >>> i had this problem recently. try using recon-all -stage one in a terminal window in