check out the free surfer manual, around page 31. they show pictures and an example. use talairach or volume scanner coordinates to specify them, not volume index as it might say in the manual. margaret
On Thu, 23 Dec 2004, Joongnam Yang wrote: > Thanks Margaret, > > Is there a reference on how to specify the corpus collosum and pons in the > WMFill under Preferences->Expert Preferences in csurf? > > Nam. > > >>> Margaret Duff <[EMAIL PROTECTED]> 12/22/04 12:10 PM >>> > i had this problem recently. try using recon-all -stage one in a terminal > window instead of process volume in csurf. or specify the corpus collosum > and pons in the WMFill tab under Preferences->Expert Preferences in csurf. > it probably cant find where to segment. you might want to check the > archives for more detail on this problem. hope this helps, margaret > > > On Wed, 22 Dec > 2004, Joongnam Yang wrote: > > > Hi all, > > > > During "create surface" on csurf, > > right after "fill white matter" is done, as soon as "tesselate RH white > > matter" starts, > > an error message comes up, which is > > > > images filled: > > somedirectory/mri/filled/COR-001...not found, wmfill first. > > > > I checked the directory of /mri/filled, which did not have COR-00* files. > > There was only one file, COR-.info. > > It seems that the first process in "create surface" (fill white matter) is > > supposed to create all those COR-00* files in the /mri/filled, but none is > > created. > > I changed permission on the directory, to no avail. > > Would someone suggest something? > > > > Nam. > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
