either set the pons cutting plane manually using the -ponsin
mri_fill. This may fix things, but in some cases it may not due to spurious
connections between the cerebellum and occipital cortex (particularly in
noisy scans). These have to be corrected manually.
Bruce
On Mon, 8 Nov 2004, Cala
Cutting plane not correct is usually due to the wrong talairach.xfm or
the noisy image.
Are you sure that you are getting the correct talairach.xfm?
This problem has been on the mailing list many times in the past.
Tosa
Calabrese Massimiliano wrote:
I'm sorry but I have another question for you.
I'm sorry but I have another question for you.
Sometimes the cutting planes are not correct and it doesn't delete the
cerebellum.
Whay can I do? Manual editing is my only chance?
Thanks a lot
Massimiliano Calabrese
Neuroimaging Group
Neuroimmunology Branch
NINDS, NIH
__
oh sorry, /space/troy/1/users/FREESURFER/SM2S1_fsfast/func/SM2S1 and i was
trying to run it on the bold folder. could it have to do with my matlab
startup? i thought i modified it correctly when i started using the
program. but as i look back through my command window i see a warning
that my sta
No, bshort should work fine. Can you be more specific as to where the
data are? There are lots of possibilities under /space/troy ...
doug
Margaret Duff wrote:
>
> hi, i am using bshort files. should i try bfloat? thanks, margaret
>
> On
> Thu, 4 Nov 2004, Doug Greve wrote:
>
> >
> > Hi M
hi, i am using bshort files. should i try bfloat? thanks, margaret
On
Thu, 4 Nov 2004, Doug Greve wrote:
>
> Hi Margaret,
>
> is the input volume bshort or bfloat? I've never been able to get the
> AFNI 3dvolreg to work with floats. Could be my bfloat-AFNI converter.
>
> doug
>
>
> Margaret Du
yes. If there is green there, it means that it is part of the surface and
should be filled.
cheers,
Bruce
On Mon, 8 Nov 2004, Calabrese Massimiliano wrote:
Goodmorning everybody.
Do you think I have to fill ( during manual editing) the white matter
lesion (black hole) which are outlined in green?
Goodmorning everybody.
Do you think I have to fill ( during manual editing) the white matter
lesion (black hole) which are outlined in green?
Thanks a lot for your help.
Massimiliano Calabrese
Imaging group
Neuroloimmunology Branch
NINDS, NIH
___
Free
