Re: [O] Enabling another language in org-babel

2014-07-31 Thread Jay Kerns
e code below. >> >> Ista Zahn writes: >> >>> ;; Copyright (C) 2014 Ista Zahn >>> ;; Author: Ista Zahn, based on ob-julia.el by G. Jay Kerns, and ob-R.el >>> ;; by Eric Schulte and Dan Davison >> >> You need to reformat this -- see files with

Re: [O] [ANN] Merge of new export framework on Wednesday

2013-02-06 Thread Jay Kerns
nsion those who live and work near me, in my view, for the better. Cheers, and may we share many good days ahead. -- Jay Kerns On Sun, Feb 3, 2013 at 2:00 PM, Nicolas Goaziou wrote: > ━ > ANNOUNCING THE NEW EXPORT FRAMEWORK > ━ >

Re: [O] org-export-babel-evaluate and :exports none

2013-02-18 Thread Jay Kerns
d not incorrectly have the exported source block. So, I guess I can't reproduce, unfortunately. -- Jay Kerns

Re: [O] ob-doc-R-extended.org

2013-02-22 Thread Jay Kerns
Greetings, On Fri, Feb 22, 2013 at 3:55 AM, Andreas Röhler wrote: > Coming upon this tutorial, which seems excellent for beginners > > http://orgmode.org/worg/sources/FIXME/ob-doc-R-extended.org > > maybe move from FIXME into common place? > > Andreas > Yes, I agree, that's an excellent one, and

Re: [O] ob-doc-R-extended.org

2013-02-22 Thread Jay Kerns
On Fri, Feb 22, 2013 at 5:04 PM, Andreas Röhler wrote: > Am 22.02.2013 22:58, schrieb Achim Gratz: > >> Andreas Röhler writes: >>> >>> IMHO it would be great if Jay moves it already at place. As it's a >>> doku basically, giving a nice entry into a lot of things. If exporting >>> is not perfect ye

Re: [O] ob-doc-R-extended.org

2013-02-22 Thread Jay Kerns
On Fri, Feb 22, 2013 at 8:49 PM, Jay Kerns wrote: > > Hmm... thanks for the heads-up, Achim. I usually work on the master > branch and I haven't actually checked that what I did is compatible > with the maint branch. I will checkout the maint branch and make sure > everyth

[O] [BABEL] the julia language

2013-03-03 Thread Jay Kerns
julialang.org/ [2] https://stat.ethz.ch/pipermail/ess-help/2012-September/008212.html [3] https://stat.ethz.ch/pipermail/ess-help/2013-February/008640.html [4] https://github.com/emacs-ess/ESS -- G. Jay Kerns, Ph.D. Youngstown State University http://people.ysu.edu/~gkerns/

Re: [O] [BABEL] the julia language

2013-03-03 Thread Jay Kerns
Dear Eric, On Sun, Mar 3, 2013 at 2:05 PM, Eric Schulte wrote: > Hi Jay, > > Having read through intro-julia.org and scanned ob-julia.el I have to > say this looks great. Thanks for sharing! I should be saying "Thanks" to you! Org Babel is truly great work; I use it almost every day of my life

Re: [O] [BABEL] the julia language

2013-03-04 Thread Jay Kerns
Dear Bastien, On Mon, Mar 4, 2013 at 12:53 PM, Bastien wrote: > Hi Jay, > > thanks a lot for ob-julia.el! > > Can I add it to contrib/babel/langs in org-mode.git right now? > > http://orgmode.org/cgit.cgi/org-mode.git/tree/contrib/babel/langs > > For code in contrib/ we don't need authors to as

Re: [O] ox-html.el removal

2013-03-11 Thread Jay Kerns
On Mon, Mar 11, 2013 at 3:11 AM, Achim Gratz wrote: [snip] > Nevertheless my suggestion to the Org community is to respect your wish > and move these two files to contrib... [snip] I have to say I think Achim is really on the right track, here. Also for those interested in a bit of historical

Re: [O] ox-html.el removal

2013-03-11 Thread Jay Kerns
Dear Carsten, I certainly support your position. And if *anybody's* wishes should be honoured, I would think yours should be at the top of that list, along with the wishes of the other (at least) 4 copyright holders' of ox-html.el. Cheers, Jay On Mon, Mar 11, 2013 at 4:58 AM, Carsten Dominik

[O] inline Babel calls in math environments and table cells

2013-03-11 Thread Jay Kerns
Greetings, I am in the process of updating materials to the new exporter in anticipation of Org 8.0. It appears that inline SRC blocks are not being evaluated in table cells and math environments in the new exporter, for instance, something like this: \( SRC_R[:exports results]{2+3} \) or like

Re: [O] inline Babel calls in math environments and table cells

2013-03-11 Thread Jay Kerns
Let me make clear: I'm talking about on export to LaTeX the code blocks aren't evaluated. I can execute in the buffer and everything works fine. -- Jay On Mon, Mar 11, 2013 at 4:54 PM, Jay Kerns wrote: > Greetings, > > I am in the process of updating materials to the new exporter in

Re: [O] inline Babel calls in math environments and table cells

2013-03-11 Thread Jay Kerns
Hello there, On Mon, Mar 11, 2013 at 5:26 PM, Eric Schulte wrote: > Hi Jay, > > This sounds like a question about the new exporter which is beyond my > ken. > > However, code blocks may be called from Org-mode tables, using the `sbe' > [1] macro. > > Hope this helps, Thank you. Yes, it defini

Re: [O] [bug] new beamer exporter always adds default width to graphics

2013-03-12 Thread Jay Kerns
Dear James, On Tue, Mar 12, 2013 at 9:25 AM, James Harkins wrote: > Hi, > > Apologies if this was previously reported. I read the digest, so I > might not have seen the most recent e-mails. I took a quick glance at > gmane's archive and didn't readily see anything. > > The width attribute for bea

Re: [O] inline Babel calls in math environments and table cells

2013-03-12 Thread Jay Kerns
Hello, I went back and spent some time to rethink how I was approaching my problem. Instead of inline src blocks like this: \( SRC_R{blah} \) or this | SRC_R{blah} | or even this \begin{equation} SRC_R{blah} \end{equation} I could get by doing noweb substitution like this: #+NAME: foo #+BE

Re: [O] Create course material with org-mode

2013-03-12 Thread Jay Kerns
Hello, On Tue, Mar 12, 2013 at 12:47 PM, Marcin Borkowski wrote: > Dnia 2013-03-11, o godz. 23:02:46 > Marcin Borkowski napisał(a): > [snip] Many comments. - You can set up a single org file with tagged headings, like this: * These are my slides :slide: * These are m

Re: [O] inline Babel calls in math environments and table cells

2013-03-12 Thread Jay Kerns
Dear Chuck, On Tue, Mar 12, 2013 at 10:31 PM, Charles Berry wrote: [snip extended brew example] > > Whoa. That opens up a lot of possibilities I really hadn't thought about before. *Thank you*. -- Jay

[O] posting guide?

2013-03-13 Thread Jay Kerns
e. Cheers, -- Jay [1] http://www.quotes.net/quote/2101 [2] http://lists.gnu.org/archive/html/emacs-orgmode/2013-03/msg00449.html [3] http://lists.gnu.org/archive/html/emacs-orgmode/2013-03/msg00747.html -- G. Jay Kerns, Ph.D. Youngstown State University http://people.ysu.edu/~gkerns/

Re: [O] posting guide?

2013-03-13 Thread Jay Kerns
Dear Andreas, On Wed, Mar 13, 2013 at 3:59 PM, Andreas Röhler wrote: > Hi Jay, > > if you permit my opinion as a kind of guest-reader for years: don't think > it's needed. > IMO it was an accident. Hopefully the person will recover and present it's > excuses some weeks or month later. > > Expec

Re: [O] posting guide?

2013-03-13 Thread Jay Kerns
Dear Bastien, On Wed, Mar 13, 2013 at 4:33 PM, Bastien wrote: > Hi Jay, > Well, I would not invest too much time on this, personally. No, you don't seem to be bothered at all; those attacks seem to wash off you like water off a duck's back, or scandals off of Bill Clinton's resume. ;-) > Fro

Re: [O] posting guide?

2013-03-13 Thread Jay Kerns
Dear Tom, Perfect - that's just what I'm looking for. And that's exactly what I'll do. Cheers, Jay On Mar 13, 2013 6:16 PM, "Thomas S. Dye" wrote: > Aloha Jay, > > Jay Kerns writes: > > > > > That's my point: I propose that we, as a

Re: [O] posting guide?

2013-03-13 Thread Jay Kerns
On Wed, Mar 13, 2013 at 8:34 PM, Robert Horn wrote: > > I share Bastien's opinion. My experience with community building is > that describing and rewarding exemplary behavior is much more useful > than attempting to set strict rules of behavior. You need some basic > rules, but then emphasize d

Re: [O] posting guide?

2013-03-14 Thread Jay Kerns
[snip] >> FWIW, +1 > > +2 :) > Fair enough. I agree that time shouldn't be wasted on lone users, and that includes me: http://orgmode.org/w/?p=worg.git;a=commitdiff;h=933d17d268a1618d9244c12014403a05c05c5a25 Cheers, -- Jay

Re: [O] posting guide?

2013-03-14 Thread Jay Kerns
Reading my message again, it doesn't say what I wanted it to say, and it sounds in my head not in the way I wanted it to sound. Let me try again, with more words: That's totally fine by me, I meant it when I said "OK if you don't want to do that", and I don't want a silly thing like a posting gui

[O] hall of fame, i.e. Org fortunes

2013-03-15 Thread Jay Kerns
Hello, In another thread, Bastien proposed a sort of "Hall of Fame" where we could keep track of excellent (or otherwise exemplary) posts to this list. I like this idea. I've only been closely following the list since the new exporter's release after an extended hiatus, though; that's been, what

Re: [O] Syntax of Org Babel ":results" header argument

2013-03-15 Thread Jay Kerns
Greetings, On Fri, Mar 15, 2013 at 1:30 PM, shripad sinari wrote: [snip] I am happy with the current behavior, but that isn't to say it couldn't possibly be improved or that I disagree with Sebastien's suggestions. It did take me quite some time to figure out what the heck was going on with it

Re: [O] Publish to html issue

2013-03-16 Thread Jay Kerns
Dear Igor, On Sat, Mar 16, 2013 at 7:12 PM, Igor Kupczyński wrote: > Dear List, > > I try to set up a simple org --> html publishing system. [snip] > > (setq org-publish-project-alist > '(("org" > :base-directory "~/tmp/org/" > :publishing-directory "~/t

Re: [O] org-babel src block generated graphics included twice if CAPTION is added

2013-03-17 Thread Jay Kerns
Greetings Li, On Sun, Mar 17, 2013 at 9:10 AM, Li Bowen wrote: > Hi, > > If #+CAPTION is added, the figure will be included in the exported pdf > file twice. > > #+begin_src R :exports both :results graphics :file img.pdf > hist(rnorm(100)) > #+end_src > > #+CAPTION: Some description > #+RESULTS:

Re: [O] org-babel src block generated graphics included twice if CAPTION is added

2013-03-17 Thread Jay Kerns
On Sun, Mar 17, 2013 at 6:21 PM, Nick Dokos wrote: [snip] > I think the best way to deal with problems like this is to name your code > blocks (and results blocks). > [snip] I can't speak for Li, but it works on my system and I like Nick's solution better than mine. Cheers, -- Jay

Re: [O] scaling the text in the results block of some code chunk when exported using LaTeX

2013-03-18 Thread Jay Kerns
Hello Shripad, On Mon, Mar 18, 2013 at 7:44 PM, shripad sinari wrote: [snip] > Is there a way for me to define the scaling of the text within the results > block when this is exported using latex? [snip] I don't know of a way to scale /within/ the code block, but does this work instead? #+

Re: [O] R code block on Worg

2013-04-09 Thread Jay Kerns
Dear Nick, On Tue, Apr 9, 2013 at 8:18 PM, Nick Dokos wrote: > The example I used earlier came from > > http://orgmode.org/worg/org-contrib/babel/languages/ob-doc-R.html [snip] I seem to have overlooked your earlier message - sorry about that. As far as doing R stuff with Org I am afraid t

Re: [O] Inline code in tables?

2013-04-11 Thread Jay Kerns
Dear John, On Thu, Apr 11, 2013 at 6:56 PM, John Hendy wrote: > I have a table like so: Please see the responses by Eric S. and Charles B. in the following thread: http://lists.gnu.org/archive/html/emacs-orgmode/2013-03/msg00832.html I hope this helps, -- Jay

[O] uniborg

2013-04-16 Thread Jay Kerns
Greetings, I remember reading a discussion some time ago about Org, and the Borg, and unicorns with mechanical faceplates, "Resistance is futile," etc. Here is one interpretation of a uniborg: http://orgmode.org/worg/org-artwork.html Feel free to improve it, embellish it, play with it, modify it

Re: [O] uniborg

2013-04-18 Thread Jay Kerns
On Thu, Apr 18, 2013 at 6:22 AM, Bastien wrote: [snip] > Also, I uploaded the SVG version of the new logo, it's under CC by-sa > if people want to use/modify it: > > http://orgmode.org/img/org-mode-unicorn-logo.svg Thanks - looks great. I still get the same "404 Not Found" on uniborg.svg, but

Re: [O] Gentoo ebuild for app-emacs/org-mode-8.0.1

2013-04-22 Thread Jay Kerns
Christoph, On Sun, Apr 21, 2013 at 4:00 PM, Christoph LANGE wrote: > Hi all, > > Gentoo users may find my ebuild for app-emacs/org-mode-8.0.1 useful. > Please download it from > https://466720.bugs.gentoo.org/attachment.cgi?id=346230 and let's hope > this ebuild (or alternatively Emacs 24.4) will

Re: [O] New maintainer

2013-04-22 Thread Jay Kerns
On Mon, Apr 22, 2013 at 6:27 AM, Julian M. Burgos wrote: > I echo all the thanks that other people already gave. My digital life > orbits around org-mode, so thanks to everyone who contributed to this > project. Keep it up!! > > Julian > I have been watching these multiple messages go by trying

Re: [O] Release 8.0

2013-04-22 Thread Jay Kerns
On Sun, Apr 21, 2013 at 9:25 AM, Bastien wrote: > Hi Memnon, > > Memnon Anon writes: [ snip ] Quick question: is it true, now that Org 8.0 has been released, that the engine which publishes Worg is now Org 8.0, too? In other words, is it now safe to publish to Worg all of that stuff which was

[O] Updating Worg: call to Worg authors

2013-04-23 Thread Jay Kerns
Hello there, I started some work on this and pushed a worg-new-exporter branch to Worg. I followed Carsten's advice which I will repeat here for convenience: Given an existing Worg repository obtained by $ git clone w...@orgmode.org:worg.git Everybody else can hook onto this branch with $ git

Re: [O] Updating Worg: call to Worg authors

2013-04-25 Thread Jay Kerns
Greetings, First: thanks to Nicholas Goaziou and Thorsten Jolitz. There is a bunch of work already completed - indeed, out of the 83 currently existing headlines, 63 are marked DONE. But there is a lot of updating that remains. And the longer the process continues, the further the two branches w

Re: [O] Updating Worg: call to Worg authors

2013-04-25 Thread Jay Kerns
On Thu, Apr 25, 2013 at 7:18 PM, Jay Kerns wrote: > First: thanks to Nicholas Goaziou and Thorsten Jolitz. There is That should have been "Nicolas"; I apologize. Jay

[O] worg-new-exporter successful publish locally

2013-04-26 Thread Jay Kerns
Hi there, The new Worg branch publishes for me without error under Org-mode version 8.0.1 (release_8.0.1-24-g92f372). I updated the existing emacs.el (underlying Worg, IIUC) to the Org 8.0 exporting/publishing syntax. You can see the latest draft in worgtest-init.el which lives in the top-level

Re: [O] worg-new-exporter successful publish locally

2013-04-27 Thread Jay Kerns
HI Thorsten, On Sat, Apr 27, 2013 at 4:40 AM, Thorsten Jolitz wrote: > Jay Kerns writes: > > Hi Jay, > > I started this page, so I kind of 'own' it, but the local variable has > been added later, not by me, probably by Eric Schulte, because he is

Re: [O] worg-new-exporter successful publish locally

2013-04-28 Thread Jay Kerns
Dear Achim, On Sat, Apr 27, 2013 at 11:43 AM, Achim Gratz wrote: [snip] Thank you for looking into this. The worg-local-init.el is a great idea! Thanks, also, for confirming successful publish - that's great news. I have a question, a comment, and some information to add to my earlier message

[O] [Worg] [New Exporter] invalid time specification

2013-04-28 Thread Jay Kerns
Hello there, I've noticed people mentioning on the list that there is a problem with Worg not publishing, something about an invalid time specification. Having been publishing Worg locally myself, I noticed that I was getting a similar error when it came time to construct the sitemap.org. My work

Re: [O] worg-new-exporter successful publish locally

2013-04-28 Thread Jay Kerns
On Sun, Apr 28, 2013 at 3:12 PM, Achim Gratz wrote: [snip] > I've fixed it on Worg. > Confirmed - thanks! -- Jay

Re: [O] worg-new-exporter successful publish locally

2013-04-28 Thread Jay Kerns
On Sun, Apr 28, 2013 at 4:21 PM, Achim Gratz wrote: > Achim Gratz writes: > > I've fixed this, not that I would know exactly how… :-) > Confirmed again, and thanks again! I'm really starting to warm up to this batch publishing approach, it's quite handy. -- Jay

Re: [O] [Worg] [New Exporter] invalid time specification

2013-04-29 Thread Jay Kerns
On Mon, Apr 29, 2013 at 3:41 AM, Nicolas Goaziou wrote: > > This should be fixed. Thanks for reporting it. > Confirmed - thank you. -- Jay

Re: [O] Call for volunteer -- managing the publication setup wrt orgmode.org/worg and orgmode.org

2013-04-29 Thread Jay Kerns
Hello there, On Mon, Apr 29, 2013 at 10:50 AM, Bastien wrote: > Hi Marc, > > that's great. Jay is also okay to help here. It's better to have one > person in charge and another one as a backup, so I suggest to announce > you will take this in charge and have Jay to help you in case. > > Does it

Re: [O] Org LaTeX export not setting default title?

2013-05-08 Thread Jay Kerns
Hi Dan, On Wed, May 8, 2013 at 6:06 AM, Daniel E. Doherty wrote: > All, > > I just upgraded to 8.02, so I am trying out the new exporter. Nice. > > A little nit. When I export a minimal org file, it should use the > name of the file or buffer as the title if I set nothing in #+TITLE:, > but it

Re: [O] I merged worg-new-exporter into worg.git master

2013-05-14 Thread Jay Kerns
Dear Bastien, On Tue, May 14, 2013 at 8:25 AM, Bastien wrote: > Hi all, > > now both orgmode.org and Worg are published from Org 8.0. > > I merged worg-new-exporter into worg.git master, and updated > the emacs.el file on the server -- many thanks again to those > involved in this move. > > Marc

Re: [O] How to get BibTeX to work with Org mode LaTeX export?

2013-05-18 Thread Jay Kerns
Hi Omid, On Sat, May 18, 2013 at 4:40 AM, Omid wrote: > - The \bibliographystyle and \bibliography commands are at the end of the > document. > - The question is about how to get Org mode to do the whole job, as there is > a command for it which is supposed to do exactly that but it doesn't. > H

Re: [O] Org sources and PDF files on Worg

2013-05-21 Thread Jay Kerns
the problem begins. Once the error is identified and fixed, then things should get back to normal. I've copied Marc on this message - we'll see if we can track the problem down. Thanks for the report. -- Jay Kerns -- G. Jay Kerns, Ph.D. Youngstown State University http://people.ysu.edu/~gkerns/

Re: [O] Org sources and PDF files on Worg

2013-05-22 Thread Jay Kerns
On Wed, May 22, 2013 at 3:04 AM, Bastien wrote: > Hi Jay and Marc, [snip] > Don't want to steal your work :) Just thought I would fix this > because I may be the one who broke things by forgetting to compile > at some point. I checked the scripts in ~/bin/ and they do compile > normally. Also

Re: [O] formatting org-babel output

2013-05-22 Thread Jay Kerns
Hi Joe, On Wed, May 22, 2013 at 7:18 AM, Joe Bogner wrote: > I am using org-mode and babel with R for reproducible research. I > would like certain numbers in the output tables to be formatted for > easier reading - such as eliminating decimals and adding commas for > readability. > [snip] Have

Re: [O] R plots always exported to Rplots.pdf

2013-05-22 Thread Jay Kerns
Hi Greg, On Wed, May 22, 2013 at 8:23 AM, Greg Slodkowicz wrote: [snip] > This is what my code block looks like: > > #+NAME: pvals_waw > #+BEGIN_SRC R :file fig1.png :exports results > pvals = read.table("waw_data.txt", header=T) > plot(pvals$pvalue, pvals$length) > #+END_SRC > Have you tried

[O] how to both :body-only t and :table-of-contents t

2011-09-21 Thread G. Jay Kerns
Dear Org Mode list, First: congratulations on Org mode; it is truly dynamite. I am publishing a project to HTML for the purposes of Jekyll post-processing. For this, I need to set :body-only t so I can put the YAML frontmatter at the top of my file. However, I would also like to have the TOC ex

Re: [O] how to both :body-only t and :table-of-contents t

2011-09-23 Thread G. Jay Kerns
Dear Jan On Fri, Sep 23, 2011 at 3:51 AM, Jan Böcker wrote: > > Hi Jay, > > I faced the same problem about a year ago. > See this thread in the mailing list archive: > > http://thread.gmane.org/gmane.emacs.orgmode/24227 > > The HTML exporter will refuse to include a TOC if body-only is t; the >

Re: [O] Formatting R output

2012-09-10 Thread G. Jay Kerns
fix this with inline code-segment header arguments which will override buffer-wide or system wide settings. So, for example, you could do src_R[:results raw]{2 + 2} which will return 4 and not =4=. I hope this helps, Jay -- * G. Jay Kerns, Ph.D. Associate Professor Mathematics and Statistics http://people.ysu.edu/~gkerns/

Re: [O] Enabling another language in org-babel

2014-06-24 Thread G. Jay Kerns
Great work, Ista! Cheers, Jay -- G. Jay Kerns, Ph.D. Youngstown State University http://gkerns.people.ysu.edu/ On 06/24/14 15:52, Ista Zahn wrote: > I just hacked up a rudimentary ob-stata.el by replacing "julia" with > "stata" in ob-julia.el by G. Jay Kerns (an