Re: [O] org-ref in action

2014-06-26 Thread Joseph Vidal-Rosset
Hello Jonhn, hello the list, I have already used org-bibtex (and ox-bibtex) and I have just tried to use org-ref . Is it possible that a conflict exists between the former(s) and the latter? My links for example are not clickable and the link to the default bibliography does not work at all... But

Re: [O] org-ref in action

2014-06-26 Thread Alan Schmitt
On 2014-06-26 20:44, Matt Lundin writes: > Alan Schmitt writes: > >> On 2014-06-26 16:39, Matt Lundin writes: >> >>> By contrast, ox-bibtex.el runs citations through bibtex2html, which is >>> pretty much limited to the "old-fashioned" bibtex formats. >> >> What would be required for bibtex2html

Re: [O] org-ref in action

2014-06-26 Thread Xebar Saram
Hi all off topic a bit again. im an academic (asst. prof) in Epidemiology and have been using org-mode for about a year now. i love using org but im really not very technical at all. it has always been a dream for me to ditch word and move over to Latex and even better orgmode to write my scientif

Re: [O] [FeatReq] New option for `org-entry-properties' WHICH argument?

2014-06-26 Thread Matt Lundin
Thorsten Jolitz writes: > Hi List, > > what about adding one more option for WHICH > > ,[ C-h f org-entry-properties RET ] > | org-entry-properties is a compiled Lisp function in `org.el'. > | > | (org-entry-properties &optional POM WHICH SPECIFIC) > | [...] > | If WHICH is nil or `all', ge

[O] Fwd: Re: How to identify all headings that won't be exported?

2014-06-26 Thread Jonathan Leech-Pepin
Forwarding to list. Somehow reply-all did not actually reply to all -- Forwarded message -- From: "Jonathan Leech-Pepin" Date: Jun 26, 2014 4:05 PM Subject: Re: [O] How to identify all headings that won't be exported? To: "Thomas S. Dye" Cc: Hello Thomas On 26 June 2014 15:09,

Re: [O] How to identify all headings that won't be exported?

2014-06-26 Thread Thomas S. Dye
Aloha all, Answering myself ... t...@tsdye.com (Thomas S. Dye) writes: > Is there a practical way to identify descendants for my use > case? > > (defun tsd-get-names-labels-and-headings () > (interactive) > (save-excursion > (goto-char (point-min)) > (let ((matches)) >

Re: [O] BUG variable expansion with table

2014-06-26 Thread Andreas Leha
Hi Rainer, Rainer M Krug writes: > Hi > > there seems to be a bug in the table transfer. The org file below > evaluates as shown, i.e. the TABLE_BLOCK contains one column less then > it should as the first column is discarded and the second one used as > the row names. This only occurs when ther

[O] org-ref in action

2014-06-26 Thread Doyley, Marvin M.
Hi John, Thanks for sharing. My students and I love it. Cheers, M

[O] [FeatReq] New option for `org-entry-properties' WHICH argument?

2014-06-26 Thread Thorsten Jolitz
Hi List, what about adding one more option for WHICH ,[ C-h f org-entry-properties RET ] | org-entry-properties is a compiled Lisp function in `org.el'. | | (org-entry-properties &optional POM WHICH SPECIFIC) | [...] | If WHICH is nil or `all', get all properties. If WHICH is | `special'

Re: [O] refile affects kill ring

2014-06-26 Thread Matt Lundin
Samuel Wales writes: > in recent maint, it seems that refiling an entry will put that entry > into the kill ring. perhaps it should leave the kill ring intact? I think this has been the behavior for a very long time. E.g., I went back to a version of org-refile from 2010 and it invokes org-copy

[O] How to identify all headings that won't be exported?

2014-06-26 Thread Thomas S. Dye
Aloha all, Inspired by John Kitchin's org-ref, I'm working on a little function that returns all the pieces of an Org mode file that are candidates for cross referencing. The helm package lets me choose from among the candidates and then another little function inserts the chosen link. This all w

Re: [O] Orgtbl-mode in latex: escaped braces and dollars, and other arbitrary transformations

2014-06-26 Thread Nicolas Goaziou
Thibaut Verron writes: > Would changing the last lines of `orgtbl-to-latex` to something like this > work as a long-term solution? > > (require 'ox-latex) > (let* ((*orgtbl-verbatim* (plist-get params :verbatim)) >(backend (if *orgtbl-verbatim* nil 'latex))) > (orgtbl-to

Re: [O] org-ref in action

2014-06-26 Thread Matt Lundin
Alan Schmitt writes: > On 2014-06-26 16:39, Matt Lundin writes: > >> By contrast, ox-bibtex.el runs citations through bibtex2html, which is >> pretty much limited to the "old-fashioned" bibtex formats. > > What would be required for bibtex2html to take biblatex input? I thought > the backend for

[O] Add a new face for org-verbatim?

2014-06-26 Thread kuanyui
Org-verbatim syntax is '=STRING=' ,but the equal symbol makes it look not distinguishing ('=' itself looks like it seems to be a part of STRING). I misread them often. So, I think maybe Org-mode can add a new face for equal symbol itself? I mean, user can dim the face of '=' to avoid confusion.

Re: [O] minor problem on major version number

2014-06-26 Thread Nick Dokos
Achim Gratz writes: > Nick Dokos writes: >> After last night's git pull, org-version returns "beta_8.3" which >> broke the major-version calculation above. I hardwired the org version >> major number above, but I was wondering if we could agree on some >> convention/method that will not break in

Re: [O] minor problem on major version number

2014-06-26 Thread Alexander Baier
On 2014-06-26 18:14 Nick Dokos wrote: > I have some backward-compat code that does this: > > (setq major-version (string-to-number (nth 0 (split-string > (org-version) "[.]" It does not work in this situation, because "beta_8.3" is not a valid version string, but "version<" might be interestin

Re: [O] minor problem on major version number

2014-06-26 Thread Achim Gratz
Nick Dokos writes: > After last night's git pull, org-version returns "beta_8.3" which > broke the major-version calculation above. I hardwired the org version > major number above, but I was wondering if we could agree on some > convention/method that will not break in the future - maybe an > org

Re: [O] org-article.cls generated empty after tangling

2014-06-26 Thread Thomas S. Dye
Aloha Onur, Onur Solmaz writes: > I followed the instructions on this website: > http://orgmode.org/worg/org-contrib/babel/examples/article-class.html > > and tried to tangle article-class.org to obtain the class file > org-article.cls that is to be used when exporting LaTeX files. The file is >

Re: [O] results from Python block not visible

2014-06-26 Thread Daniel Clemente
El Thu, 26 Jun 2014 12:36:47 -0400 Eric Schulte va escriure: > > #+BEGIN_SRC python :results output > > print "x" > > #+END_SRC > > > > It prints: > > > > #+RESULTS: > > : None > > > > I expected to see "x". This worked some days ago. > > > > This works for me using the latest version of Org-mode

Re: [O] org-ref in action

2014-06-26 Thread Alan Schmitt
On 2014-06-26 16:39, Matt Lundin writes: > By contrast, ox-bibtex.el runs citations through bibtex2html, which is > pretty much limited to the "old-fashioned" bibtex formats. What would be required for bibtex2html to take biblatex input? I thought the backend format was similar or the same (as y

Re: [O] Using #+NAME for single value, not table?

2014-06-26 Thread Thomas S. Dye
Aloha Rainer, Rainer M Krug writes: > Hi > > I use #+NAME to define some parameters for my analysis, which works > quite nice for tables. but I would now like to use the same apprioach > for values, e.g. a single number, but I don't manage. Is this possible? > For illustration a short example: >

Re: [O] results from Python block not visible

2014-06-26 Thread Eric Schulte
Daniel Clemente writes: > Hi, this babel code recently stopped working on my system: > > #+BEGIN_SRC python :results output > print "x" > #+END_SRC > > It prints: > > #+RESULTS: > : None > > I expected to see "x". This worked some days ago. > This works for me using the latest version of Org-mod

Re: [O] org-ref in action

2014-06-26 Thread Eric Schulte
John Kitchin writes: > Some features could be merged, but there is an important difference in that > org-ref uses bibtex as the backend database, and reftex for searching, and > org-bibtex uses org-mode headings as the backend database, and tag/property > searches (I think). It is like the diffe

[O] results from Python block not visible

2014-06-26 Thread Daniel Clemente
Hi, this babel code recently stopped working on my system: #+BEGIN_SRC python :results output print "x" #+END_SRC It prints: #+RESULTS: : None I expected to see "x". This worked some days ago. If I use a command like os.system("xeyes"), I see it running. In addition I don't see the Python bl

[O] minor problem on major version number

2014-06-26 Thread Nick Dokos
I have some backward-compat code that does this: --8<---cut here---start->8--- ;;(setq major-version (string-to-number (nth 0 (split-string (org-version) "[.]" (setq major-version 8) (if (< major-version 8) (progn (require 'org-latex) ...

Re: [O] babel evaluation of python and utf-8

2014-06-26 Thread Daniel Clemente
> > #+BEGIN_SRC python :prefix # -*- coding: utf-8 -*- :results output > print(u'é') > #+END_SRC > I also see the same problem here. Even if you include # -*- coding: utf-8 -*- as the first line. Shouldn't org-babel already be using utf-8 instead of ASCII for input/output? By the way, w

Re: [O] org-ref in action

2014-06-26 Thread Matt Lundin
Grant Rettke writes: > On Thu, Jun 26, 2014 at 9:08 AM, Matt Lundin wrote: >> I think the key in any possible feature merge is to remember citation >> management is idiosyncratic. > > Off topic: > > How do people choose today? > > Why choose bibtex over biblatex? Thanks to inertia, bibtex still

Re: [O] org-ref in action

2014-06-26 Thread Jorge A. Alfaro-Murillo
Grant Rettke writes: > How do people choose today? > > Why choose bibtex over biblatex? For journal submission. With BibTeX you only have to copy paste at the end of your LaTeX file the contents of the generated .bbl file. Moreover, journals provide a default style for BibTeX, not biblatex. And

Re: [O] org-ref in action

2014-06-26 Thread Ken Mankoff
On 2014-06-26 at 10:11, Grant Rettke wrote: > Why choose bibtex over biblatex? People choose bibtex because that is how it has been done and is well supported/documented and still popular on Google results. People choose biblatex because that appears to be the new under-development with-bells-and

Re: [O] org-ref in action

2014-06-26 Thread Grant Rettke
On Thu, Jun 26, 2014 at 9:08 AM, Matt Lundin wrote: > I think the key in any possible feature merge is to remember citation > management is idiosyncratic. Off topic: How do people choose today? Why choose bibtex over biblatex? Where do people discuss such questions like this in real life?

Re: [O] org-ref in action

2014-06-26 Thread Matt Lundin
Matt Lundin writes: > John Kitchin writes: > >> Some features could be merged, but there is an important difference in >> that org-ref uses bibtex as the backend database, and reftex for >> searching, and org-bibtex uses org-mode headings as the backend >> database, and tag/property searches (I

Re: [O] org-ref in action

2014-06-26 Thread Matt Lundin
John Kitchin writes: > Some features could be merged, but there is an important difference in > that org-ref uses bibtex as the backend database, and reftex for > searching, and org-bibtex uses org-mode headings as the backend > database, and tag/property searches (I think).  It is like the > dif

Re: [O] Orgtbl-mode in latex: escaped braces and dollars, and other arbitrary transformations

2014-06-26 Thread Thibaut Verron
2014-06-26 15:17 GMT+02:00 Nicolas Goaziou : > Thibaut Verron writes: > > >> Now, are these "limitations of Org" really preventing it from exporting > a > >> string verbatim? That would seem like the most logical default in this > >> situation, wouldn't it? > > I disagree in the general case. The

Re: [O] Orgtbl-mode in latex: escaped braces and dollars, and other arbitrary transformations

2014-06-26 Thread Nicolas Goaziou
Thibaut Verron writes: >> Now, are these "limitations of Org" really preventing it from exporting a >> string verbatim? That would seem like the most logical default in this >> situation, wouldn't it? I disagree in the general case. The most logical default for Org is to treat contents as plain

Re: [O] Orgtbl-mode in latex: escaped braces and dollars, and other arbitrary transformations

2014-06-26 Thread Thibaut Verron
2014-06-26 12:38 GMT+02:00 Nicolas Goaziou : > Hello, > > Thibaut Verron writes: > > > I'm forwarding this question asked on stackexchange: > > http://tex.stackexchange.com/questions/186605/with-orgtbl-how-to-ensure- > > that-braces-and-dollars-are-not-escaped > > > > After some investigation, it

Re: [O] Orgtbl-mode in latex: escaped braces and dollars, and other arbitrary transformations

2014-06-26 Thread Thibaut Verron
> > Now, are these "limitations of Org" really preventing it from exporting a > string verbatim? That would seem like the most logical default in this > situation, wouldn't it? (Disclaimer: I don't "understand the limitations of > Org", so these last questions may be ridiculous to someone who does)

Re: [O] org-ref in action

2014-06-26 Thread John Kitchin
Some features could be merged, but there is an important difference in that org-ref uses bibtex as the backend database, and reftex for searching, and org-bibtex uses org-mode headings as the backend database, and tag/property searches (I think). It is like the difference between org-contacts and

Re: [O] :header-args: over several lines?

2014-06-26 Thread Rainer M Krug
Aaron Ecay writes: > 2014ko ekainak 25an, Rainer M Krug-ek idatzi zuen: >> >> Hi >> >> I want to add many variables to a subtree. But it seems >> that :header-args: only allows one line - is this true? In my case, this >> line would be exceedingly long and very difficult to debug. >> >> Is the

[O] Using #+NAME for single value, not table?

2014-06-26 Thread Rainer M Krug
Hi I use #+NAME to define some parameters for my analysis, which works quite nice for tables. but I would now like to use the same apprioach for values, e.g. a single number, but I don't manage. Is this possible? For illustration a short example: --8<---cut here---start---

Re: [O] org-ref in action

2014-06-26 Thread Fabrice Popineau
+1 for org-bibtex (and ox-bibtex) that I'm using for a couple of years. But org-ref seems to go further (video is convincing). It would be really nice to merge org-ref and org-bibtex before they split too far apart. Wishful thinking from me because I don't see that I'm in position to do it. Fabri

Re: [O] babel evaluation of python and utf-8

2014-06-26 Thread Alan Schmitt
On 2014-06-26 09:35, Alan Schmitt writes: > #+BEGIN_SRC python :prefix # -*- coding: utf-8 -*- :results output > print(u'∀') > #+END_SRC I see that somewhere the email did not get through, the character above is a "forall" character. I have the same problem with a simpler accent #+BEGIN_SRC pyt

Re: [O] /some 'text'/

2014-06-26 Thread Alan Schmitt
On 2014-06-26 03:38, Alan L Tyree writes: > I have the following expression in my manuscript: > > /Caltex Oil (Aust) Pty Ltd v The Dredge 'Willemstad'/ [1976] HCA 65 > > I want the /.../ part to be italicised on export, but (of course) it isn't. > > The variable org-emphasis-regexp-components was

Re: [O] Orgtbl-mode in latex: escaped braces and dollars, and other arbitrary transformations

2014-06-26 Thread Nicolas Goaziou
Hello, Thibaut Verron writes: > I'm forwarding this question asked on stackexchange: > http://tex.stackexchange.com/questions/186605/with-orgtbl-how-to-ensure- > that-braces-and-dollars-are-not-escaped > > After some investigation, it seems that the behavior is hidden deep in the > export rou

[O] Orgtbl-mode in latex: escaped braces and dollars, and other arbitrary transformations

2014-06-26 Thread Thibaut Verron
Hello, I'm forwarding this question asked on stackexchange: http://tex.stackexchange.com/questions/186605/with-orgtbl-how-to-ensure- that-braces-and-dollars-are-not-escaped After some investigation, it seems that the behavior is hidden deep in the export routines, and I was wisely suggested to

Re: [O] Org-mode Tables not showing correctly in graphical emacs

2014-06-26 Thread Thibaut Verron
David Rose jeppesen.com> writes: > > Hi, > > I am not sure if this is an actual bug or if I am just missing some > new setting/configuration option, but when in a graphical emacs window > org-mode table alignments are way off, yet when in a 'terminal' window > emacs session tables are shown as

Re: [O] Org-mode Tables not showing correctly in graphical emacs

2014-06-26 Thread David Rose
Thank you Peter. I have to admit I do feel stupid for missing the font differences. That did take care of it. Cheers, David Rose Linux Systems Administrator Information Technology Services Jeppesen A Boeing Company ph: +46 31 722 62 25 | mobile: +46 73

Re: [O] Org-mode Tables not showing correctly in graphical emacs

2014-06-26 Thread Peter Frings
Hi David, On 26 Jun 2014, at 08:54, David Rose wrote: > I am not sure if this is an actual bug or if I am just missing some > new setting/configuration option, but when in a graphical emacs window > org-mode table alignments are way off, yet when in a 'terminal' window > emacs session tables are

[O] org-article.cls generated empty after tangling

2014-06-26 Thread Onur Solmaz
I followed the instructions on this website: http://orgmode.org/worg/org-contrib/babel/examples/article-class.html and tried to tangle article-class.org to obtain the class file org-article.cls that is to be used when exporting LaTeX files. The file is weirdly empty. Does anybody have an idea why

[O] babel evaluation of python and utf-8

2014-06-26 Thread Alan Schmitt
Hello, I'm having trouble with the babel evaluation of python blocks containing utf-8 encoded characters (which is the encoding of my org file). I tried the approach suggested in this message https://lists.gnu.org/archive/html/emacs-orgmode/2010-12/msg00086.html in the following block #+BEGIN_SR

Re: [O] passing the contents of a block as an escaped string

2014-06-26 Thread Alan Schmitt
Hello Charles, On 2014-06-24 18:37, Charles Berry writes: > , > | #+NAME: prin-block > | #+BEGIN_SRC emacs-lisp :var a="abc" > | (defun foo (blk) > | (save-excursion > | (org-babel-goto-named-src-block blk) > | (nth 1 (org-babel-get-src-block-info 'light > | > | #+EN