Two Questions about OverlapJcasTermAnnotator

2022-08-23 Thread Peter Abramowitsch
Hi Sean (or whoever has some historical knowledge) I'm trying to improve the term annotators for speed and have noticed that the overlap term annotator does not seem to pass even the most rudimentary use cases suggested in the code comments: // things like "blood, urine, sputum cultures" should p

Re: Two Questions about OverlapJcasTermAnnotator [EXTERNAL]

2022-08-23 Thread Finan, Sean
Hi Peter, the "blood, urine"... in the example did work when I originally tested, but the default settings (window size, etc.) may have been changed since then. Everything in preftext is simple string literal. It is likely that certain things will not appear in raw text. The UMLS has some int

Re: Two Questions about OverlapJcasTermAnnotator [EXTERNAL]

2022-08-23 Thread Peter Abramowitsch
Thanks Sean. Glad to know there wasn't any special behavior with prefterms that I hadn't known about all these years Peter On Tue, Aug 23, 2022 at 4:31 PM Finan, Sean wrote: > Hi Peter, > > the "blood, urine"... in the example did work when I originally tested, > but the default settings (windo