Hi Joyce,
I think that ytex is version-agnostic, but I don't use it so I can't guarantee
anything.
Sean
-Original Message-
From: Dunlop, Joyce (HP) [mailto:joyce.dun...@va.gov]
Sent: Tuesday, January 17, 2017 4:25 PM
To: dev@ctakes.apache.org
Cc: Dorner, Andrew J. (PSI)
Subject: RE: cT
Hi Melvin
I suggest you have a look at the company Mmodal.
They have gone a very long way toward clinically tuned speech recognition
+ NLP + populating and acting on spoken clinical data
I am not directly connected with them but had the opportunity to meet
their team and see the capabilities of th
I am a programer / entrepreneur working on a voice data entry system for
EMR. To me, the future of EMR data entry will be voice based. I am still
researching / analyzing this idea and am happy to discuss with anyone
interested. Technically, the key technologies for my project will be speech
recogni
Thanks Sean,
Do you know if YTEX which works with a SQL Database is also version-agnostic?
Thanks,
Joyce
-Original Message-
From: Finan, Sean [mailto:sean.fi...@childrens.harvard.edu]
Sent: Tuesday, January 17, 2017 3:11 PM
To: dev@ctakes.apache.org
Cc: Dorner, Andrew J. (PSI)
Subject:
Now seems like as good a time as any for an introduction. It is great to hear
about other organizations working to install cTAKES.
I'm a radiologist at UC Davis in Sacramento, and came across cTAKES back in
July. I have it up and running on a personal Windows laptop where I've used it
for some
Hi Joyce,
Ctakes is actually umls version-agnostic, it just requires that the umls be in
a format that it can understand. As you noticed, the umls bundles repackaged
for ctakes are 2011AB.
You can package any version and flavor of the umls for ctakes 3.2.3. The
Dictionary Gui in ctakes sandb
Good afternoon,
When looking at cTAKES into the ctakes-resources-3.2.1.1.bin.zip it looks like
it has a folder for umls2011ab. I am assuming that means 3.2.2.1 supported
umls2011ab and if that same zip can be used with 3.2.2 then it also supports
umls2011ab.
I downloaded and installed the lat
Thanks Tim!
-Original Message-
From: Miller, Timothy [mailto:timothy.mil...@childrens.harvard.edu]
Sent: Tuesday, January 17, 2017 2:05 PM
To: dev@ctakes.apache.org
Subject: Re: New to CTAKES [SUSPICIOUS] [SUSPICIOUS]
There are new sentence detector and coref modules in sandbox but I've
There are new sentence detector and coref modules in sandbox but I've
just graduated the code into the existing ctakes-core and ctakes-
coreference modules once it's ready.
Tim
On Tue, 2017-01-17 at 18:22 +, Finan, Sean wrote:
> Hi Joyce,
>
> Thank you for the information on your background
Sean M,
I will try to work through the process this tomorrow.
Thanks!
Joyce
-Original Message-
From: Mullane, Sean *HS [mailto:sp...@hscmail.mcc.virginia.edu]
Sent: Tuesday, January 17, 2017 11:10 AM
To: dev@ctakes.apache.org
Subject: [EXTERNAL] RE: New to CTAKES
Joyce,
This may hel
Sean F,
We don't currently have a particular interest but trying to gather information
for the VA to make their short/long term plans related to CTAKES.
Thanks,
Joyce
-Original Message-
From: Finan, Sean [mailto:sean.fi...@childrens.harvard.edu]
Sent: Tuesday, January 17, 2017 12:22 P
Hi Joyce,
Thank you for the information on your background and what is being done for/by
the VA. That is very interesting and I am very curious to find out what
happens after your analyses. Any contribution back to the open source is
welcome!
I am in the process of moving the dictionary buil
Hi Sean F,
Thanks for the information.
A little background on me and my Group. We have been contracted by the
Veteran's administration to get CTAKES/YTEX running within the VA Network.
Our efforts will include:
-Run HP Fortify source code analyzer against the software to bring it into VA's
As Sean mentioned, we the NLP lab at Boston Children's Hospital/Harvard Medical
School will be dedicating significant effort in the next several months (=FTE)
to make a solid release happen asap. We expect the release within 3 months. As
Sean mentioned help from the broader cTAKES community is w
> 3.2.3 is still considered a snapshot - do you have any feeling when/if it
> will be released?
Good question.
One person has volunteered to be a release manager and we at the Boston
Children's Hospital nlp group are trying to get some additional hands on the
task. There are still outstanding
Thanks Sean,
3.2.3 is still considered a snapshot - do you have any feeling when/if it will
be released?
Thanks,
Joyce
-Original Message-
From: Finan, Sean [mailto:sean.fi...@childrens.harvard.edu]
Sent: Tuesday, January 17, 2017 10:57 AM
To: dev@ctakes.apache.org
Subject: [EXTERNAL] R
Joyce,
This may help, here are some notes I put together when installing YTEX in our
Windows/SQL Server test environment. I didn't build from source here, this is
just installation (including UMLS). I'm working on writing up these
instructions more thoroughly so if you use this please let me kn
Hi Joyce,
If you are building from source then you should not need to manually download
the resources. Maven should be doing it for you. Well, that is the behavior
of 3.2.3 ... I honestly cannot remember what 3.2.2 did ...
Otherwise, I think that if the latest was the 3.2.1.1 then that is pro
I am new to ctakes , i have looked into this page
https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+3.2+Dictionaries+and+Models
.
Is there any set of examples or urls which provide the starting point for
doing so.
Also found this somewhat related.
https://svn.apache.org/repos/asf/ctakes/sa
Good Morning,
I am trying to set up a development environment using the source release of
3.2.2.
Reading though the documentation on
https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+3.2+Developer+Install+Guide.
Merge the version-matching resources ZIP file from
http://sourceforge.net
Hi Shyam,
I just checked an example into 3.2.3 trunk.
org.apache.ctakes.examples.pipeline.ProcessLinesClinicalRunner.java
It reads one of the example files and logs some simple entity properties. The
code for the collection reader :
// Add the Lines from File reader
final Fil
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