topkgtests
+ * d/examples: Add d/tests/test_duckpy_basic.py as example
+ * d/control: Add Depends on python3-h2 (Closes: #990620)
+
+ -- Nilesh Patra Sat, 03 Jul 2021 01:37:34 +0530
+
python-duckpy (3.1.0-1) unstable; urgency=medium
* Team upload.
diff -Nru python-duckpy-3.1.0/debian/control pyt
eam Upload.
+ * d/control: Add Missing Depends on python3-distutils
+(Closes: #990726)
+ * d/p/fix_syntaxwarning.patch: Fix syntax warning for
+literal comparison
+
+ -- Nilesh Patra Tue, 06 Jul 2021 00:05:05 +0530
+
resfinder (3.2-2) unstable; urgency=medium
[ Nilesh Patra ]
nder-2.0.3+git20190809.dde157a/debian/changelog 2021-07-06
00:36:09.0 +0530
@@ -1,3 +1,11 @@
+virulencefinder (2.0.3+git20190809.dde157a-3) unstable; urgency=medium
+
+ * Team Upload.
+ * d/control: Add Missing Depends on python3-distutils
+(Closes: #990728)
+
+ -- Nilesh Patra Tue, 06 Jul
build time tests with || true
+rather just print the message that this will be dealt
+with in autopkgtests
+
+ -- Nilesh Patra Sun, 25 Jul 2021 10:36:56 +0530
+
q2-sample-classifier (2020.11.1-1) unstable; urgency=medium
* Team upload.
diff -Nru q2-sample-classifier-2020.11.1/debian
control: retitle -1 q2-sample-classifier/2020.11.1-3
On Sun, 25 Jul 2021 10:58:22 +0530 Nilesh Patra wrote:
> [...]
Unfortunately, autopkgtests were failing on arm64 and ppc64el for this
release owing to floating point errors
I've fixed this, and uploaded a new release.
Attaching deb
2020-11-16
23:20:39.0 +0530
+++ samtools-legacy-0.1.19+dfsg/debian/changelog2021-07-25
20:41:17.0 +0530
@@ -1,3 +1,11 @@
+samtools-legacy (0.1.19+dfsg-2) unstable; urgency=medium
+
+ * Team Upload.
+ * Add Depends on zlib1g-dev
+ * Add autopkgtests
+
+ -- Nilesh Patra
stall test data as example
+ * d/docs: Install d/README.* and d/tests/run-unit-test
+as documents
+ * d/p/hardening.patch: Add CPPFLAGS which helped detect
+buffer overflow
+ * d/copyright: Test data has been written by Shruti, mentioning
+them in copyright for the same
+
+ [ Nilesh
20-11-24 14:40:20.0 +0530
+++ perm-0.4.0/debian/changelog 2021-08-03 13:17:48.0 +0530
@@ -1,3 +1,31 @@
+perm (0.4.0-7) unstable; urgency=medium
+
+ * Team Upload.
+ * d/p/fix-buffer-overflow.patch: Do not reduce buffer size by 1
+
+ -- Nilesh Patra Tue, 03 Aug 2021 13:17:48 +0530
+
bump from 10 to 12 for bullseye release
+
+ -- Nilesh Patra Tue, 03 Aug 2021 22:02:31 +0530
+
ruby-maven-libs (3.3.9+ds-2) unstable; urgency=medium
* Team upload.
diff -Nru ruby-maven-libs-3.3.9+ds/debian/compat
ruby-maven-libs-3.3.9+ds/debian/compat
--- ruby-maven-libs-3.3.9+ds/debian/compat
h: Fix autopkgtest segaults on !amd64 and !i386
++ Change the signed-ness for needed chars to fix segfault
+ * Add autopkgtests
+
+ -- Nilesh Patra Mon, 06 Sep 2021 23:46:30 +0530
+
segemehl (0.3.4-3) unstable; urgency=medium
* Team Upload.
diff -Nru segemehl-0.3.4/debian/examples seg
Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: unblock
X-Debbugs-Cc: nil...@debian.org, debian-med-packag...@lists.alioth.debian.org
Please unblock package fsm-lite
(Please provide enough (but not too much) information to help
the release team
s: #988101)
+
+ -- Nilesh Patra Sat, 08 May 2021 12:25:09 +0800
+
golang-testify (1.6.1-1) unstable; urgency=medium
* Team upload.
diff -Nru golang-testify-1.6.1/debian/patches/do-not-use-race.patch
golang-testify-1.6.1/debian/patches/do-not-use-race.patch
--- golang-testify-1.6.1/debian/patches/
ere a few changes that rendered the file
unusable to for analysis.
To me, it does not appear high priority.
> I would love if somebody could find a fix - may be by discussing
> with upstream.
No time, sorry :)
Cheers,
--
Nilesh Patra
Debian Developer, Uploading
⢀⣴⠾⠻⢶⣦⠀
⣾⠁⢠⠒⠀⣿⡁
Hi Sebastian,
On Sun, 7 Nov 2021 17:46:56 +0100 Sebastian Ramacher
wrote:
> > Hi,
> > Bioconductor 3.14 was released [1].
> >
> > [1] https://bioconductor.org/news/bioc_3_14_release/
> >
> > Like for previous r-api-bioc transitions, all reverse dependencies
> > need a manual upgrade to the new
On Tue, Nov 23, 2021 at 08:07:49PM +0100, Sebastian Ramacher wrote:
> Please go ahead.
Thanks a lot.
@All,
me and Andreas have kick started the transition. Right now, we are at dependency
level 2.
Should you have free cycles, do not hesitate to chime in.
Here is the tracker for $more info[1]
[1
On 24 November 2021 12:37:49 am IST, Sebastian Ramacher
wrote:
>Control: tags -1 = confirmed
>
>On 2021-11-23 23:32:46, Nilesh Patra wrote:
>> Hi Sebastian,
>>
>> On Sun, 7 Nov 2021 17:46:56 +0100 Sebastian Ramacher
>> wrote:
>> > >
On 1 December 2021 9:36:00 pm IST, Andreas Tille wrote:
>Hi Graham,
>
>Am Wed, Dec 01, 2021 at 01:33:15PM +0200 schrieb Graham Inggs:
>> On Wed, 1 Dec 2021 at 13:03, Nilesh Patra wrote:
>> > One i386 autopkgtest failure for r-bioc-biocparallel is stalling the
>>
On 1 December 2021 11:01:12 pm IST, Andreas Tille wrote:
>But this is set[3]. If not Salsa-CI should fail.
You are testing it on a different version than in testing that's why it passes.
If you want to validate, trigger CI on the upload commit for 0.12.1-4
>Moreover, the issue
>is not connecte
Hi Graham,
On 12/2/21 2:48 AM, Graham Inggs wrote:
I've already added hints marking r-bioc-biocparallel/1.28.2-2 urgent
and gffread/0.12.1-4 as a bad test, so please do let us know if there
are others.
Yes, I could spot some more.
Please set these to ignore, or Let me know if I should rather
On 3 December 2021 9:41:48 pm IST, Julien Cristau wrote:
>On Tue, Sep 07, 2021 at 12:27:05AM +0530, Nilesh Patra wrote:
>> diff -Nru segemehl-0.3.4/debian/patches/arm64.patch
>> segemehl-0.3.4/debian/patches/arm64.patch
>> --- segemehl-0.3.4/debian/patches/arm64.patch
Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: unblock
X-Debbugs-Cc: python-cog...@packages.debian.org
Control: affects -1 + src:python-cogent
Please unblock package python-cogent
This package was earlier stuck due to numba incompat with python
Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: unblock
Please unblock package python-pynndescent
This package was earlier stuck due to some precision issues on ppc64el.
By the time that got sorted, python3.11 came in and one of its
dependencies
Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: unblock
X-Debbugs-Cc: ruby-maven-l...@packages.debian.org
Control: affects -1 + src:ruby-maven-libs
Please unblock package ruby-maven-libs
[ Reason ]
Letting this through helps fix RC bug#1033912 w
On Sun, 1 May 2022 11:42:07 +0200 =?UTF-8?B?RHlsYW4gQcOvc3Np?=
wrote:
> Hi,
> Bioconductor 3.15 has been released [1].
Please hold this off until r-base migrates (which should be soon)
--
Best,
Nilesh
signature.asc
Description: PGP signature
On 2 May 2022 11:54:34 am IST, Andreas Tille wrote:
>Am Mon, May 02, 2022 at 09:39:25AM +0530 schrieb Nilesh Patra:
>> On Sun, 1 May 2022 11:42:07 +0200 =?UTF-8?B?RHlsYW4gQcOvc3Np?=
>> wrote:
>> > Hi,
>> > Bioconductor 3.15 has been released [1].
>>
On Tue, May 03, 2022 at 04:04:22PM +0200, Graham Inggs wrote:
> Control: tags -1 + moreinfo
> > I am now trying to get ggplot2 and friends in testing. Please give
> > it time until this weekend to migrate after which I will remove
> > my hacks and re-upload.
>
> Please also look at rmatrix, it is
Control: tags -1 - moreinfo
Hi Graham/Andreas,
On Tue, May 03, 2022 at 04:04:22PM +0200, Graham Inggs wrote:
> On Tue, 3 May 2022 at 15:51, Nilesh Patra wrote:
> > I am now trying to get ggplot2 and friends in testing. Please give
> > it time until this weekend to migrate aft
On 11 May 2022 2:06:08 pm IST, "Dylan Aïssi" wrote:
>Hi all,
>
>> Am Fri, May 06, 2022 at 06:10:52PM +0530 schrieb Nilesh Patra:
>> >
>> > I have done so, I think we can start the transition. Please consider
>> > pushing
>> > the butt
Hi,
On 19 May 2022 1:10:23 pm IST, Paul Gevers wrote:
>Package: release.debian.org
>User: release.debian@packages.debian.org
>Usertag: britney
>
>Hi,
>
>On 11-05-2022 12:34, Graham Inggs wrote:
>> Yes, please go ahead.
>>
>> Tracker is at:
>> https://release.debian.org/transitions/html/r-
On 19 May 2022 2:25:23 pm IST, Andreas Tille wrote:
>Am Thu, May 19, 2022 at 01:41:12PM +0530 schrieb Nilesh Patra:
>>
>> I think we can workaround these anyway by editing the DESCRIPTION file --
>> maybe I'll do so and upload either late in the night today or earl
Hi Graham,
I did some work to cleanup the rest stuff meanwhile, and need
your help to ignore some of the CI temporarily to complete the migration; and
also because unstable counterparts pass.
I have pasted a list at the end of this email, please see to it.
--
Best,
Nilesh
Package
On 22 May 2022 7:05:18 pm IST, Andreas Tille wrote:
>Hi Graham,
>
>Am Sun, May 22, 2022 at 09:09:01AM +0200 schrieb Graham Inggs:
>> It looks like the only blocker now is waiting for r-bioc-scater [1] to age:
>>
>> Too young, only 2 of 5 days old
>>
>> It doesn't get 2-day migration because i
Hi,
Is there an ETA for this?
Asking since openssl is blocking a number of rev-deps from
migrating for almost a month by now.
--
Best,
Nilesh
signature.asc
Description: PGP signature
On Mon, Nov 21, 2022 at 06:11:41PM +0100, Andreas Tille wrote:
> Hi Adrian and others,
>
> Am Mon, Nov 21, 2022 at 06:33:52PM +0200 schrieb Adrian Bunk:
> > > This is really hard to do, thought. The new packages are needing those
> > > packages from the transition. I actually injected two packag
On 6 January 2023 1:26:05 pm IST, "Rebecca N. Palmer"
wrote:
>Should this go ahead before the freeze? I think yes if the new dask works,
>but am open to disagreement.
The version of dask is same since few months. What do you mean by new dask?
>skbio #1017574
This has been fixed in latest
in -dev only
+
+ -- Nilesh Patra Sun, 14 May 2023 09:35:20 +
+
nlopt (2.7.1-4) unstable; urgency=medium
* Team upload
diff -Nru nlopt-2.7.1/debian/libnlopt0.preinst
nlopt-2.7.1/debian/libnlopt0.preinst
--- nlopt-2.7.1/debian/libnlopt0.preinst1970-01-01 00:00:00.0
+
+
Hi
On Tue, May 16, 2023 at 03:01:10PM +0200, Andreas Tille wrote:
> when fixing bug #1035428 I realised test suite issues with
>
> r-cran-thematic [1]
>-> Error in `svglite_(filename, bg, width, height, pointsize, standalone,
> always_valid)`: Graphics API version mismatch
>
> r-c
On Tue, May 16, 2023 at 08:26:21AM -0500, Dirk Eddelbuettel wrote:
> Note that none of this affects the release. My recommendation is temporarily
> suspend the autopkgtest in those affected packages.
No, don't do that as they indicate a new r-base being pulled as one of
the dependencies (which wo
On Tue, May 16, 2023 at 07:25:15PM +0530, Nilesh Patra wrote:
> I personally prefer "1" over 2 as it is less noise (and effort).
On second thoughts, I think sending it via testing-proposed-updates
would be a better thing to do, as this case perfectly fits the problem.
It's be s
On Tue, May 16, 2023 at 09:31:20AM -0500, Dirk Eddelbuettel wrote:
>
> On 16 May 2023 at 19:49, Nilesh Patra wrote:
> | On Tue, May 16, 2023 at 07:25:15PM +0530, Nilesh Patra wrote:
> | > I personally prefer "1" over 2 as it is less noise (and effort).
> |
> | On s
On Wed, May 17, 2023 at 08:58:58AM +0200, Andreas Tille wrote:
> Am Tue, May 16, 2023 at 07:49:55PM +0530 schrieb Nilesh Patra:
> > On Tue, May 16, 2023 at 07:25:15PM +0530, Nilesh Patra wrote:
> > > I personally prefer "1" over 2 as it is less noise (and effort).
&g
Hi Paul,
On Thu, Jul 06, 2023 at 08:28:45PM +0200, Paul Gevers wrote:
> On 06-07-2023 19:08, Paul Gevers wrote:
> > Yes, we'll take care of that where it looks sane to do so (examples of
> > that are r-cran-epi); I'll manually schedule the "combined" tests, such
> > that they disappear from the ex
On Thu, Jul 06, 2023 at 09:13:46PM +0200, Sébastien Villemot wrote:
> > I'm not sure so please explain in more detail. dh-r was designed to put
> > the lowest restriction regarding the versions. I remember some
> > discussion some time ago that Dirk thought we should put stronger
> > restrictions
On Thu, Jul 06, 2023 at 02:24:57PM -0500, Dirk Eddelbuettel wrote:
> [...]
I understood some of it (not completely, possibly because of lack of
background with R extensions), but thanks a lot for taking the
time to explain it to me!
> So if tibble does this now, it should only affect tibble itsel
On Fri, Jul 21, 2023 at 10:35:57AM +0200, Andreas Tille wrote:
> I've just pushed r-bioc-rhdf5filters to salsa[1]. We are replacing code
> copies of several compression related libs by the Debian equivalents.
> Seems upstream added zstd and thus I added libzstd-dev to Build-Depends
> and tried to
On Sat, Jul 29, 2023 at 07:44:32PM +0200, Paul Gevers wrote:
> Well, I didn't check everything yet (hint is at [1]) but at least the
> autopkgtest regression in r-bioc-rhdf5filters (see [2] to find that in
> unstable it fails too) should really be solved.
I've fixed hdf5filters and uploaded to uns
On 17 November 2023 11:34:21 pm IST, Dirk Eddelbuettel wrote:
>
>On 17 November 2023 at 18:43, Andreas Tille wrote:
>| Am Fri, Nov 17, 2023 at 10:12:02AM -0600 schrieb Dirk Eddelbuettel:
>| > Leaving
>| >
>| >r-cran-irlba
>| >r-cran-openmx
>| >
>| > for you (unless you got to it alrea
On 18 November 2023 12:14:37 am IST, Dirk Eddelbuettel wrote:
>
>On 17 November 2023 at 23:50, Nilesh Patra wrote:
>|
>|
>| On 17 November 2023 11:34:21 pm IST, Dirk Eddelbuettel
>wrote:
>| >
>| >On 17 November 2023 at 18:43, Andreas Tille wrote:
>| >
nders the package useless otherwise.
+At the moment, the current code is unable to identify the
+letsencrypt certs. Used a systempool for the same and create
+a newcertpool as a fallback. Also added a Depends in d/control
+for ca-certificates for the same reason.
+(Closes: #107
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