[Package Fastaq] - How to incorporate manpages into python package

Hi all, I'm packagin up Fastaq: Vcs-Browser: http://anonscm.debian.org/gitweb/?p=debian-med/fastaq.git Homepage: https://github.com/js21/Fastaq The package builds fine, but lintian is complaining about man pages. I've committed all my work to the debian git repository. I essentially used the

[iva] - Python 3 code depends on pysam

Hi all, I started packaging iva - Iterative Virus Assembler Upstream - https://github.com/sanger-pathogens/iva Debian - http://anonscm.debian.org/cgit/debian-med/iva.git/ The package has several dependencies, but I seem to have stumbled into an annoying one. iva depends on Pysam. But iva is Pyt

Fwd: [iva] - Python 3 code depends on pysam

Forgot to CC debian python: -- Forwarded message -- From: Jorge Sebastião Soares Date: Mon, Nov 24, 2014 at 11:31 AM Subject: Re: [iva] - Python 3 code depends on pysam To: Debian Med Project List Hi Bary, all On Fri, Nov 21, 2014 at 7:29 PM, Barry Warsaw wrote: > On

Re: Fwd: [iva] - Python 3 code depends on pysam

Hi Piotr, Thanks for having a look. On Mon, Nov 24, 2014 at 11:57 AM, Piotr Ożarowski wrote: > [Jorge Sebastião Soares, 2014-11-24] > > [1] - > http://anonscm.debian.org/cgit/debian-med/iva.git/tree/debian/rules > > just a quick look: > * invoking dh_python3 before dh_au

Re: Fwd: [iva] - Python 3 code depends on pysam

Piotr, On Mon, Nov 24, 2014 at 12:26 PM, Piotr Ożarowski wrote: > [Jorge Sebastião Soares, 2014-11-24] > > > http://anonscm.debian.org/cgit/debian-med/iva.git/tree/debian/rules > > > > > > just a quick look: > > > * invoking dh_python3 before dh_auto_

Re: Fwd: [iva] - Python 3 code depends on pysam

Hi guys, So essentially the package build halts when it tries to run the test suite: This is the error I'm getting when the pysam module is being imported: root@debian:~/iva-0.10.0# python3.4 setup.py test running test running egg_info writing top-level names to iva.egg-info/top_level.txt writin

Re: Fwd: [iva] - Python 3 code depends on pysam

, no? Regards, Jorge > 2014-11-24 16:36 GMT+00:00 Jorge Sebastião Soares : > >> Hi guys, >> >> So essentially the package build halts when it tries to run the test >> suite: >> >> This is the error I'm getting when the pysam module is being impo

Re: Fwd: [iva] - Python 3 code depends on pysam

Hi Ghis, Disabling the tests worked. The package builds at least, but not lintian clean . I'll cary on tomorrow. Regards, Jorge On Mon, Nov 24, 2014 at 5:02 PM, Jorge Sebastião Soares < j.s.soa...@gmail.com> wrote: > Hi Ghis > > On Mon, Nov 24, 2014 at 4:58 PM, Ghisla

Re: Fwd: [iva] - Python 3 code depends on pysam

to do this? Jorge On Mon, Nov 24, 2014 at 5:28 PM, Jorge Sebastião Soares < j.s.soa...@gmail.com> wrote: > Hi Ghis, > > Disabling the tests worked. > > The package builds at least, but not lintian clean > . > > I'll cary on tomorrow. > > Regards, > &

Re: Fwd: [iva] - Python 3 code depends on pysam

Hi Piotr On Tue, Nov 25, 2014 at 4:00 PM, Piotr Ożarowski wrote: > [Jorge Sebastião Soares, 2014-11-25] > > Hi all, > > > > I am thinking to go about this in one of two ways: > > > > 1 - State python3-pip as a dependency and use pip3 to install pysam the

[python3-pysam + iva] - Pysam depends on pyrex

Good morning, This is just like a Matryoshka doll... So I tentatively started packaging python3-pysam. Still haven't created a git alioth project for it. I did clone the python-pysam project [1], in hopes that it would be just a couple of minor changes. Only to find that pysam depends on python

Re: [python3-pysam + iva] - Pysam depends on pyrex

-pysam. I will test if removing the python-pyrex dependency breaks the package. Regards, Jorge On Wed, Nov 26, 2014 at 9:08 AM, Jorge Sebastião Soares < j.s.soa...@gmail.com> wrote: > Good morning, > > This is just like a Matryoshka doll... > So I tentatively started packa

[python-pysam] - 4 packages built and all lintian clean

Hi all, I have commited my last changes to [1]. The test suite does not run automatically. I believe that pysam needs to be installed before hand in order to test it. I have installed python3-pysam on my system and ran the test suite and it seemed to ran fine. I emailed the test report to the gu

Re: [python-pysam] - 4 packages built and all lintian clean

It's been a while since I posted this first. Is someone able to have a look at this package? Jorge On Fri, Nov 28, 2014 at 12:58 PM, Jorge Sebastião Soares < j.s.soa...@gmail.com> wrote: > Hi all, > > I have commited my last changes to [1]. > > The test suite doe

Re: [python-pysam] - 4 packages built and all lintian clean

Hi Charles, Much appreciated! Regards, Jorge On Sat, Dec 6, 2014 at 8:38 AM, Charles Plessy wrote: > Le Sat, Dec 06, 2014 at 08:19:39AM +0000, Jorge Sebastião Soares a écrit : > > It's been a while since I posted this first. > > > > Is someone able to have a lo