Hi all, I started packaging iva - Iterative Virus Assembler
Upstream - https://github.com/sanger-pathogens/iva Debian - http://anonscm.debian.org/cgit/debian-med/iva.git/ The package has several dependencies, but I seem to have stumbled into an annoying one. iva depends on Pysam. But iva is Python3 code. It seems to me that there is no python3-pysam package in Debian. vagrant@debian:~$ apt-cache search pysam python-pysam - interface for the SAM/BAM sequence alignment and mapping format python-pysam-tests - interface for the SAM/BAM sequence alignment and mapping format (test data) python-pysaml2 - SAML Version 2 to be used in a WSGI environment - Python 2.x python-pysaml2-doc - SAML Version 2 to be used in a WSGI environment - doc Looking further into python-pysam: vagrant@debian:~$ aptitude show python-pysam Package: python-pysam State: not installed Version: 0.7.7-1 Priority: optional Section: python Maintainer: Debian Med Packaging Team < debian-med-packag...@lists.alioth.debian.org> Architecture: amd64 Uncompressed Size: 2,233 k Depends: libc6 (>= 2.15), zlib1g (>= 1:1.2.3.3), python:any (>= 2.7.5-5~), cython, python (< 2.8), python (>= 2.7~), python-pyrex Description: interface for the SAM/BAM sequence alignment and mapping format Pysam is a Python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Homepage: https://github.com/pysam-developers/pysam Does anyone know if python3-pysam will be available soon? Or if there are any plans to have it as a Debian package at all? Kind regards, Jorge
