Re: cmake help needed for metabat

2020-05-29 Thread Alexis Murzeau
hi, Le 29/05/2020 à 10:10, Andreas Tille a écrit : > >> In test/CMakeLists.txt, there is a reference to them as >> "${CMAKE_BINARY_DIR}/contigs_depth.txt", but it should be >> "${CMAKE_CURRENT_SOURCE_DIR}/contigs_depth.txt", unless the text files >> should be copied while building, but that doesn

Re: cmake help needed for metabat

2020-05-29 Thread Andreas Tille
Hi Alexis, thanks a lot for your extremely helpful explanation. On Thu, May 28, 2020 at 10:04:02PM +0200, Alexis Murzeau wrote: > > There is a Debian patch that replace cmake/htslib.cmake with a > pkg_check_modules call, which doesn't create targets, so that why it fails. > There is the same iss

Re: cmake help needed for metabat

2020-05-28 Thread Alexis Murzeau
Hi, Le 28/05/2020 à 20:33, Andreas Tille a écrit : > Hi, > > I'm trying to package metabat[1] in the COVID-19 effort of the Debian > Med team. I went forward with tweaking cmake but I'm now struck with: > > [...] > CMake Error at src/CMakeLists.txt:39 (add_dependencies): > The dependency targ

cmake help needed for metabat

2020-05-28 Thread Andreas Tille
Hi, I'm trying to package metabat[1] in the COVID-19 effort of the Debian Med team. I went forward with tweaking cmake but I'm now struck with: Installing None MetaBAT into /usr -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11"). -- Found PkgConfig: /usr/bin/pkg-config (fo