nvert a package to Git just ping me and I'll do so just drop me a
> note.
>
I will update the package but I prefer that you convert the package to git
since I am not very comfortable with this procedure.
Thanks
Best regards,
Dylan
Le 22 janv. 2016 7:37 PM, "Andreas Tille" a écrit :
>
> To late:
>
> $ apt-cache showsrc muscle
> Package: muscle
> Binary: muscle
> Version: 1:3.8.31+dfsg-1
Oups :-)
Best,
Dylan
Hi all,
I updated the plink1.9 (1.90~b3.31-160203-1) package, could someone upload it?
Thanks
Best regards,
Dylan
) segments.
Thank you.
Best regards,
Dylan
[1] https://anonscm.debian.org/git/debian-med/beagle.git
> On Sat, Mar 26, 2016 at 09:59:09PM +0100, Andreas Tille wrote:
>> Uploaded - thanks for your work. Andreas.
>
> And probably beaten. ;-) Thanks a lot Afif!
Thank you both!
Dylan
an/*
Thanks for the tip :-)
Dylan
gards,
Dylan
2016-03-26 21:45 GMT+01:00 Afif Elghraoui :
> Hi, Dylan,
>
> This looks great to me. There may be an issue with the pdf manual not
> being built from source (although the source is probably a docx file),
> but we'll see what the archive masters say.
>
the upstream tarball and instruct jh_build
> to look for sources in this directory only. That would avoid this issue.
>
> Emmanuel Bourg
>
Sorry for the following question, but how can I keep the top level src
directory? git-import-orig automatically remove it and I do not find
any option to keep it.
Best regards,
Dylan
Hi Andreas,
2016-04-23 0:15 GMT+02:00 Andreas Tille :
> On Fri, Apr 22, 2016 at 10:21:37PM +0200, Dylan wrote:
>>
>> Sorry for the following question, but how can I keep the top level src
>> directory? git-import-orig automatically remove it and I do not find
>> any opt
Hi,
I have updated r-cran-beeswarm and plink1.9.
Could someone upload them to unstable?
Thank you.
Best regards,
Dylan
Hi Andreas,
Thank you for the upload.
I suppose that you don't know why my gbp import-orig remove the src folder.
Best regards,
Dylan
Hi Afif,
Le 27 avr. 2016 2:26 AM, "Afif Elghraoui" a écrit :
> I'll sponsor these two.
>
> regards
> Afif
>
Thank you for the upload.
Best regards,
Dylan
;s website. This does not
use the official API, but instead uses the API that the web dashboard uses
to generate the graphs displayed on the dashboard after login on the
Fitbit's website.
Thank you.
Best regards,
Dylan
[1] https://anonscm.debian.org/git/debian-med/r-cran-fitbitscraper.git
Hi Andreas,
Thank you for the upload.
Le 28 avr. 2016 11:29 PM, "Andreas Tille" a écrit :
> Please suggest a Debian Med task this package could be added to.
To be consistent with the other package related with Fitbit, I suggest
the "tool" task for this new one.
Best regards,
Dylan
permutation scheme (Beta
approximation) to accurately and rapidly correct for multiple-testing
at both the genotype and phenotype levels.
Thank you.
Best regards,
Dylan
[1] https://anonscm.debian.org/git/debian-med/fastqtl.git
all your dumps locally
for possible later analyse.
Thank you.
Best regards,
Dylan
[1] https://anonscm.debian.org/git/debian-med/galileo.git
Hi Andreas,
2016-05-30 22:45 GMT+02:00 Andreas Tille :
> H Dylan,
>
> thanks for working on this.
>
> On Mon, May 30, 2016 at 10:35:41PM +0200, Dylan wrote:
>> Could someone review and sponsor this new package [1] ?
>
> I stumbled upon the removal of some .hg file
2016-05-30 22:54 GMT+02:00 Dylan :
> Hi Andreas,
>
>
> 2016-05-30 22:45 GMT+02:00 Andreas Tille :
>>
>> I stumbled upon the removal of some .hg files which are some admittedly
>> useless for packaging files from mercurial which do not really harm.
>> I'm
Hi,
I have updated fastqtl, r-cran-ape and r-cran-fitbitscraper.
Could someone upload them to unstable?
Thank you.
Best regards,
Dylan
r-cran-ape.
Best regards,
Dylan
Hi,
I have updated beagle. Could someone upload it to unstable?
Thank you.
Best regards,
Dylan
Hi Andreas,
Thank you for this upload.
Did you push your changes ? (Probably a d/changelog: UNRELEASED to unstable ;-)
I don't see them.
Best regards,
Dylan
2016-06-25 15:56 GMT+02:00 Andreas Tille :
> I'll do it.
>
> On Sat, Jun 25, 2016 at 03:18:37PM +0200, Dylan wrot
Hi,
I have updated galileo. Could someone upload it to unstable?
Thank you.
Best regards,
Dylan
ket projects which worked
fine until some changes from upstream.
I just updated the watch file to point it to the tags page, uscan works now.
Thanks for your review ;-)
Best regards,
Dylan
Hi,
I have updated gwama. Could someone upload it to unstable?
I have also updated plink1.9 but it is always unreproducible. So if
someone can give me a tip to find why it is not reproducible, it would
be great.
Thank you.
Best regards,
Dylan
Hi Afif,
2016-08-28 9:35 GMT+02:00 Afif Elghraoui :
>
> Done.
>
>
> Also uploaded, though I couldn't help you with the reproducibility
> issue. Maybe it can be resolved for the next upload.
>
Thank you for these uploads.
I will try to resolve this issue for the next upload.
Best regards,
Dylan
Hi,
I have updated plink1.9 with an upstream patch which fix FTBFS for
non-amd64 builds.
Could someone upload it to unstable?
Thank you.
Best regards,
Dylan
Hi Andreas,
2016-08-31 7:33 GMT+02:00 Andreas Tille :
> I'll take it.
>
Thank you.
Dylan
Hi Andreas,
2016-08-31 8:11 GMT+02:00 Andreas Tille :
>
> Considering that you are regularly working on some Debian Med packages I
> wonder whether you might consider becoming a DM to gain upload
> permissions yourself.
>
I will have a look at it :-)
Best regards,
Dylan
Hi,
I have updated fastqtl in order to fix reproducible builds.
Could someone upload it to unstable?
Thank you.
Best regards,
Dylan
Hi Afif,
2016-09-01 6:52 GMT+02:00 Afif Elghraoui :
>
> I'll take this one. If this is the only change, I'll change the upgrade
> urgency to low. Thanks for working on build reproducibility!
>
Thank you.
Dylan
Hi Andreas,
I would like to fix autopkgtest for fastqc by adding depends to unzip
package but I think you did not push your last change related to the
upload.
Am I right? :-)
Thanks
Best regards,
Dylan
Hi
2016-09-01 20:20 GMT+02:00 Andreas Tille :
> Hi Dylan,
>
> pushed. Thanks for the attempt to fix the test
>
Thank you.
I also pushed my change which should fix the test. Could someone
upload it to unstable?
Thanks
Best regards,
Dylan
s on it [1] before to ask a
sponsorship.
Thank you.
Best regards,
Dylan
[1] https://anonscm.debian.org/git/debian-med/galileo.git/commit/?id=919e32cc9
Hi Andreas,
Le 5 sept. 2016 7:53 AM, "Andreas Tille" a écrit :
>
> Hi Dylan,
>
> I'm not sure that this list is helpful to discuss this topic. At least
> I have no personal experience. You might be more lucky to contact
> debian-ment...@lists.debian.org.
>
ith daemon, I would like to
have some comments/advices on my package [2].
Thank you.
Best regards,
Dylan
[1] https://tracker.debian.org/pkg/galileo
[2] https://anonscm.debian.org/git/debian-med/galileo.git/commit/?id=919e32cc9
e many steps to do manually before to have a daemon running. I
would like to simplify as much as possible the installation of the
daemon.
Thanks
Best regards,
Dylan
Hi,
I have updated galileo. Could someone upload it to unstable?
By the way, I have started the process to become a DM. Could someone
being an advocate for me? :-)
Thank you.
Best regards,
Dylan
Hi,
I have updated beagle. Could someone upload it to unstable?
Thank you.
Best regards,
Dylan
Hi Sascha,
2016-10-04 23:50 GMT+02:00 Sascha Steinbiss :
>
> I just took a look and uploaded.
>
Thank you.
Dylan
Hi,
I have updated plink and galileo. Could someone upload them to unstable?
Thank you.
Best regards,
Dylan
to this binary: usr/bin/bio-eagle
Thank you.
Best regards,
Dylan
[1] https://anonscm.debian.org/git/debian-med/eagle.git/
[2] https://tracker.debian.org/pkg/eagle
Hi Afif,
2016-10-17 0:31 GMT+02:00 Afif Elghraoui :
>
> Upload permissions have been granted for these two. Just wait for the
> notification email that permissions have taken effect before you proceed
> with uploading.
>
Thanks for these permissions :-)
Best regards,
Dylan
Hi,
I have updated bio-eagle. Could someone upload it to unstable or
grants me upload rights for this package?
Thank you.
Best,
Dylan
this kind of
> requests (as long as it is not in the keyring).
>
Sorry, I will add directly my fingerprint for the next times:
9A3C07BD06DE2F416E813A5D612EF1613E050F54
Thanks,
Best regards,
Dylan
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team
Package name: r-cran-qqman
URL: https://cran.r-project.org/package=qqman
License: GPL-3
Description: R package for visualizing GWAS results using Q-Q and
manhattan plots
This package will be maintained by the Debian Med Packaging
Hi,
2016-10-30 23:06 GMT+01:00 Dylan :
> Package: wnpp
> Severity: wishlist
> Owner: Debian Med Packaging Team
>
> Package name: r-cran-qqman
> URL: https://cran.r-project.org/package=qqman
> License: GPL-3
> Description: R package for visualizing GWAS results using Q
Hi Andreas,
2016-11-01 23:36 GMT+01:00 Andreas Tille :
> Uploaded - sorry for the unusual delay
>
Thanks for the upload and don't worry about the delay.
Dylan
Hi,
2016-11-08 22:52 GMT+01:00 Dylan :
> Package: wnpp
> Severity: wishlist
> Owner: Dylan Aïssi
>
> Package name: r-cran-fitcoach
> URL: https://cran.r-project.org/package=fitcoach
> License: GPL-3
> Description: R package for analysis and retrieve data of Fitbit
&
Hi Andreas,
2016-11-15 7:05 GMT+01:00 Andreas Tille :
> Please add autopkgtest.
Done! :-)
Best regards,
Dylan
Hi,
2016-11-18 23:16 GMT+01:00 Dylan :
> Package: wnpp
> Severity: wishlist
> Owner: Dylan Aïssi
>
> Package name: r-bioc-mergeomics
> URL: https://bioconductor.org/packages/Mergeomics/
> License: GPL-2+
> Description: Integrative network analysis of omics data
> The
Hi,
-- Forwarded message --
From: Dylan
Date: 2016-11-24 22:11 GMT+01:00
Subject: Bug#845590: ITP: qtltools -- Tool set for molecular QTL
discovery and analysis
To: sub...@bugs.debian.org
Package: wnpp
Severity: wishlist
Owner: Dylan Aïssi
Package name: qtltools
URL: https
intuitive name?
>
I will update this point as well.
> the build is taking a bit too long on the computer I'm using now, so I
> would have to try on a more resourceful machine to fully test it out.
>
Thanks :-)
Best regards,
Dylan
Hi Afif,
2016-12-02 10:33 GMT+01:00 Dylan :
> Hi Afif,
>
> Thanks for your review and your useful comments :-)
>
> 2016-12-02 10:11 GMT+01:00 Afif Elghraoui :
>>
>> Many thanks for preparing this package. My comments:
>>
>> * Rather than patch the includ
Hi,
I have updated r-cran-ape, could someone grants me upload rights for
this package?
dcut dm --uid 9A3C07BD06DE2F416E813A5D612EF1613E050F54 --allow r-cran-ape
Thanks.
Best regards,
Dylan
Hi Iain,
Since I maintain some Fitbit related packages, I will take this one.
Best regards,
Dylan
2016-12-03 20:09 GMT+01:00 Iain R. Learmonth :
> Hi Oliver,
>
> I'm no longer using a FitBit and this package isn't very useful to me. You
> did an upload in August 2015. Wa
emoved previous uploaders.
Could someone upload it to unstable or grants me upload rights for this package?
dcut dm --uid 9A3C07BD06DE2F416E813A5D612EF1613E050F54 --allow python-fitbit
Thanks
Best regards,
Dylan
ased.
Any suggestions to avoid to create some noise in the future with this
watch file ? :-)
Best regards,
Dylan
[1] https://people.debian.org/~eriberto/#fake-packages
the current version, I will upload this version
(with my current workaround for the versioning) to experimental.
Thanks again.
Best regards,
Dylan
2017-02-13 22:28 GMT+01:00 Brian Browning :
> Okay. Thanks for the clarification. I will plan to rename the .zip file
> with source code, and
you think it makes sense to upload to experimental just because of
> some workaround which will not be needed any more after the next
> upstream version?
I wanted to upload it to experimental due to the Stretch freeze but
maybe it is not needed and an upload to unstable is fine as well?
Best regards,
Dylan
instead of uploading anywhere seems to be the more appropriate
> way of "action".
>
Oh sorry, the upload will be only related to the new version of beagle
(21Jan17.6cc) and not about this story of versioning.
Best regards,
Dylan
13E050F54 --allow beagle
Thanks.
Best regards,
Dylan
Hi,
The new version of r-cran-qqman requires a new dependency: r-cran-calibrate.
So, I have packaged it. Could I have an upload to NEW?
Thanks
Best regards,
Dylan
2017-03-28 23:38 GMT+02:00 Dylan :
> Package: wnpp
> Severity: wishlist
> Owner: Debian Med Packaging Team
>
>
&g
Hi,
Could someone grants me upload rights for some R packages?
dcut dm --uid 9A3C07BD06DE2F416E813A5D612EF1613E050F54 --allow
r-cran-fitbitscraper r-cran-qqman r-bioc-mergeomics
Thanks
Best regards,
Dylan
than 2680 times on Google
scholar.
As OpenBUGS is a statistical software, maybe it is better if I propose this
package to Debian Science?
Best regards,
Dylan
[1] https://lists.debian.org/debian-med/2014/03/msg00222.html
[2] http://www.crfr.ac.uk/bayesian-disease-mapping
each individual source file (.odc) for an exact
license statement.".
There is no .odc files in Linux source package, so what is exactly the
license of libOpenBUGS.so, GPL3 as OpenBUGS or another specfique license to
*.odc files?
Best regards,
Dylan
[1] http://anonscm.debian.org/gitweb/?p=
each individual source file (.odc) for an exact
license statement.".
There is no .odc files in Linux source package, so what is exactly the
license of libOpenBUGS.so, GPL3 as OpenBUGS or another specfique license to
*.odc files?
Best regards,
Dylan
[1] http://anonscm.debian.org/gitweb/?p=
Hi Andreas,
2014-06-14 20:08 GMT+02:00 Andreas Tille :
> Hi Dylan,
>
> On Sat, Jun 14, 2014 at 10:45:24AM +0200, Dylan wrote:
> > Dear Andrew Thomas,
> > I began a package for OpenBUGS [1] as part of Debian Med [2].
> > I have a question about your software:
> &g
Hi Daniel,
Thank you for your link, I will look and try it. I also found this
https://github.com/aixp/Blackbox/
Best regards,
Dylan
2014-06-15 20:21 GMT+02:00 Daniel Barker :
> On Sun, Jun 15, 2014 at 11:17:16AM +0200, Dylan wrote:
> > > Despite the open licensing questi
Hi Andreas,
2014-06-15 18:57 GMT+02:00 Andreas Tille :
> Hi Dylan,
>
> On Sun, Jun 15, 2014 at 11:17:16AM +0200, Dylan wrote:
> > > Despite the open licensing question currently libOpenBUGS.so is a
> binary
> > > without source as far as I can see. So t
2014-06-24 8:31 GMT+02:00 Andreas Tille :
> Hi Dylan,
>
> On Tue, Jun 24, 2014 at 08:11:46AM +0200, Dylan wrote:
> > >
> > > Hmmm, well, that's probably possible but not nice in any case. You
> > > should definitely teach upstream to use FreePascal and
package. So, I ask you a
public permission to distribute libOpenBUGS.so as binary in our package.
Best regards,
Dylan
[1] http://anonscm.debian.org/gitweb/?p=debian-med/openbugs.git;a=summary
[2] https://wiki.debian.org/DebianMed
[3] https://lists.debian.org/debian-med/2014/06/msg00069.html
package. So, I ask you a
public permission to distribute libOpenBUGS.so as binary in our package.
Best regards,
Dylan
[1] http://anonscm.debian.org/gitweb/?p=debian-med/openbugs.git;a=summary
[2] https://wiki.debian.org/DebianMed
[3] https://lists.debian.org/debian-med/2014/06/msg00069.html
the permission on Debian Med mailing list it's adequate?
Best regards,
Dylan
2014-06-15 18:57 GMT+02:00 Andreas Tille :
> Hi Dylan,
>
> On Sun, Jun 15, 2014 at 11:17:16AM +0200, Dylan wrote:
> > > Despite the open licensing question currently libOpenBUGS.so is a
> bi
it doesn't work... if anyone have an idea to
help me?
-As libOpenBUGS.so is a private shared library it seem better to put it in
/usr/lib/$(DEB_HOST_MULTIARCH)/openbugs/ instead in
/usr/lib/$(DEB_HOST_MULTIARCH)/ , it is right?
Best regards,
Dylan
[1] https://www.jiscmail.ac.uk/cgi-bin/w
Debian package. Am I
right?).
Best regards,
Dylan
2014-07-14 23:03 GMT+02:00 Andreas Tille :
> Hi Dylan,
>
> before I can answer your questions I tried to build from the Git archive
> using git-buildpackage. Unfortunately this fails with
>
> ...
> dh binary
>
Hi all,
I saw that Charles Plessy began a package for r-cran-beeswarm[1,2] but
without time to finish it[3]. So, I would like to finish it, do you agree?
Best regards,
Dylan
[1] http://blends.debian.org/med/tasks/statistics
[2] http://git.debian.org/?p=debian-med/beeswarm.git
[3]
http
Hi,
I renamed the source package, the git repository [1] and finished the
package.
Best regards,
Dylan
[1] http://anonscm.debian.org/gitweb/?p=debian-med/r-cran-beeswarm.git
2014-07-17 3:16 GMT+02:00 Charles Plessy :
> Le Wed, Jul 16, 2014 at 08:16:24PM +0200, Andreas Tille a écrit :
>
Hi,
I just finished a package for GWAMA [1] , which is a software to perform
meta analysis of the results of Genome-Wide Association studies. It was
released under BSD-3-clause and writing in C++. If nobody has objection, I
will upload it to anonscm and create an ITP bug.
Best regards,
Dylan
[1
Hi Andreas,
Ok no problem. Thank you for your precisions.
Best,
Dylan
der. Did
I forget something?
Best regards,
Dylan
[1] git://anonscm.debian.org/debian-med/gwama.git
2014-11-18 7:59 GMT+01:00 Andreas Tille :
> Hi Dylan,
>
> On Tue, Nov 18, 2014 at 07:29:54AM +0100, Dylan wrote:
> > Hi,
> > I just finished a package for GWAMA [1] , which is
Hi Thorsten,
Thank you for your comments. Now, uscan excludes the folder.
For the file commandLine.cpp, I will send an email to upstream developers
to clarify the license.
Best regards,
Dylan
Hi Thorsten,
I clarified the license issue in commandLine.cpp with upstream and I
updated git repository accordingly.
Do you have other suggestions to improve my package?
Best regards,
Dylan
Hi all,
I updated the r-cran-ape package with the last upstream version. Could you
check the package and upload it ? There are only small changes.
Best regards,
Dylan
[1] http://anonscm.debian.org/gitweb/?p=debian-med/r-cran-ape.git
Hi Andreas,
2014-12-12 15:46 GMT+01:00 Andreas Tille :
>
>
> Uploaded to experimental (due to freeze policy). Thanks for your work
> on this
>
Thank you.
Dylan
Hi all,
I finished my package of gwama [1]. I put some upstreams examples files
(which are provides outside the source archive) in debian/upstream.docs/ ,
I don't know if it's the good way to integrate them.
Could you check the package and if it's ok, upload it?
Best regards,
could create a autopkgtest script
> using these examples + expected output.
>
Yes of course, I will create an autopkgtest script.
Best regards,
Dylan
Hi,
2014-12-17 8:17 GMT+01:00 Andreas Tille :
> On Wed, Dec 17, 2014 at 08:06:33AM +0100, Dylan wrote:
>
> > Yes of course, I will create an autopkgtest script.
>
> Just ping me if you are done with this and I'll upload.
>
>
The autopkgtest script is done.
Best regards,
Dylan
Hi Andreas,
2014-12-20 12:30 GMT+01:00 Andreas Tille :
> Hi Dylan,
>
> On Sat, Dec 20, 2014 at 09:02:17AM +0100, Dylan wrote:
> > > Just ping me if you are done with this and I'll upload.
> > >
> > The autopkgtest script is done.
>
> Thanks, uploaded.
>
>
Thank you!
Best regards,
Dylan
Hi,
I just finished the package for plink2 [1] , should I move the bug #771154
to wnpp ?
Before to upload my changes to the first plink, I am waiting for your
comments about the package of plink2.
Best regards,
Dylan
[1] http://anonscm.debian.org/cgit/debian-med/plink2.git/
ermit to replicate results obtained with all versions.
4. Others solutions?
Best regards,
Dylan
[1] https://github.com/chrchang/plink-ng/issues/12
Hi all,
2015-01-09 10:17 GMT+01:00 L.C. Karssen :
> Dear all,
>
> On 09-01-15 09:18, Andreas Tille wrote:
> > Hi Dylan,
> >
> > the reason why I did not answered is that I'm finally no plink user and
> > thus feel incompetent for a sensible hint here.
>
I move debian/* license
from GPL-2 to GPL-3 to be more consistent with upstream relicensing?
Best regards,
Dylan
Hi Andreas,
2015-01-26 8:44 GMT+01:00 Andreas Tille :
> Hi Dylan,
>
> On Mon, Jan 26, 2015 at 07:56:55AM +0100, Dylan wrote:
> >
> > I updated plink1 and plink1.9 packages according to your proposition.
>
> I just noticed your commits. Thanks for implementing this
Hi Andreas,
2015-01-31 11:14 GMT+01:00 Andreas Tille :
> Hi Dylan,
>
> please note that I uploaded a new version of plink (version 1) to
> experimental. I just added a manpage to the debian-med scope which
> should enable users of Debian Med finally also to get the thing the
yright for plink.c but I don't know if it is enough.
I also removed 2 patches and updated the rules file to do the same things.
Best regards,
Dylan
[1]
http://anonscm.debian.org/cgit/debian-med/plink1.9.git/commit/?id=95014b8c6a8202cc1d4062336f3aa246c856d4bc
Hi Andreas,
2015-02-16 8:58 GMT+01:00 Andreas Tille :
> Did you pushed? Git log only knows changes up to
>
> commit 2ff0e3cf94c30ab830927b8761f18d18337f1cd4
> Author: Dylan Aïssi
> Date: Thu Feb 5 09:10:25 2015 +0100
>
My commit for the correction of d/copyright was 3 c
Hi all,
I updated some R packages (i.e. r-cran-ape 3.3-1 and r-cran-beeswarm
0.2.0-1).
Could anyone upload them to unstable?
Thank you.
Best regards,
Dylan
Hi Andreas,
2015-06-20 12:30 GMT+02:00 Andreas Tille :
> On Fri, Jun 19, 2015 at 07:27:21AM +0200, Dylan wrote:
> > Could anyone upload them to unstable?
>
> Done.
>
> Thank you.
> Next time please make sure you check lintian issues with d/copyright with
> latest l
Hi all,
I updated some packages (i.e. r-cran-beeswarm 0.2.1-1 and plink1.9
1.90~b3w-150903-1).
Could anyone upload them to unstable?
Thank you.
Best regards,
Dylan
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