Hi, According to ftpmaster's comments, I removed the embedded copy of htsjdk and I patched some files to refer to the new htsjdk. But with this new patch, beagle FTBFS because jh_build searches .java files in .pc folder. So, I remove the .pc folder just before calling jh_build. I do not think it is the best solution but beagle builds now. Does someone have a better solution?
I also asked to upstream the source file of the pdf and he sent me a docx file. I do not find any information about how to integrate correctly a pdf from a docx file. So, I do not package the pdf anymore. Best regards, Dylan 2016-03-26 21:45 GMT+01:00 Afif Elghraoui <a...@debian.org>: > Hi, Dylan, > > This looks great to me. There may be an issue with the pdf manual not > being built from source (although the source is probably a docx file), > but we'll see what the archive masters say. >
