Re: Help with watch file

2009-09-25 Thread Daniel Leidert
Am Freitag, den 25.09.2009, 15:30 +0200 schrieb Andreas Tille: > the package infernal contains a watch file saying: > > version=3 > ftp://infernal.janelia.org/pub/software/infernal/infernal-(.*)\.tar\.gz Works here (with and without passive mode). However you should handle rc-versions. Otherwise

Re: [med-svn] r4096 - trunk/packages/vxl/trunk/debian

2009-10-03 Thread Daniel Leidert
Am Samstag, den 03.10.2009, 12:18 +0200 schrieb Mathieu Malaterre: > On Wed, Sep 30, 2009 at 9:01 PM, Andreas Tille wrote: > > On Wed, Sep 30, 2009 at 02:55:04PM +, Mathieu Malaterre wrote: > >> +common-build-arch:: > >> + echo "$(pkg_lib): package-name-doesnt-match-sonames" > > >> debian

Re: [med-svn] r4096 - trunk/packages/vxl/trunk/debian

2009-10-03 Thread Daniel Leidert
Am Samstag, den 03.10.2009, 13:33 +0200 schrieb Daniel Leidert: > Am Samstag, den 03.10.2009, 12:18 +0200 schrieb Mathieu Malaterre: > > On Wed, Sep 30, 2009 at 9:01 PM, Andreas Tille wrote: > > > On Wed, Sep 30, 2009 at 02:55:04PM +, Mathieu Malaterre wrote: > &g

Re: tagsUrl setting is required, but could not be found

2011-11-29 Thread Daniel Leidert
Mathieu Malaterre wrote: > I am trying to upload one of my package, as usual I am using: > svn-pdebuild-final, where: [..] > However it fails today with: > > $ svn-pdebuild-final > Complete layout information: > > buildArea=/home/mathieu/debian/debian-med/trunk/packages/pylibtiff/build-

Re: Problem compiling sofa-framework

2011-12-13 Thread Daniel Leidert
Is there an #include for the header file defining QwtData in GraphDataWidget.cpp? Regards, Daniel Original-Nachricht > Datum: Tue, 13 Dec 2011 10:54:22 +0100 > Von: Andreas Tille > An: Eric MAEKER > CC: Debian Mentors List , Debian Med Project > List > Betreff: Re: Problem c

Jmol unofficial debian package

2005-02-04 Thread Daniel Leidert
Hello guys, Please update the link to the unofficial Debian package for Jmol to http://debian.wgdd.de/debian/dists/unstable/non-free/binary-all/science/ I told "you" about the problem with contrib some time ago. Jmol uses some precompiled Java libraries during build-process. I further changed to

Re: Jmol unofficial debian package

2005-02-05 Thread Daniel Leidert
Am Samstag, den 05.02.2005, 11:19 +0100 schrieb Michael Banck: > On Fri, Feb 04, 2005 at 12:27:20PM +0100, Daniel Leidert wrote: > > I told "you" about the problem with contrib some time ago. Jmol uses > > some precompiled Java libraries during build-process. I further

Re: Molekel becomes free (GPL licensed)? (fwd)

2007-01-29 Thread Daniel Leidert
Am Montag, den 29.01.2007, 09:00 +0100 schrieb Andreas Tille: [GPLed Molekel] > something for our TODO-List, IMHO. http://lists.alioth.debian.org/pipermail/debichem-devel/2007-January/09.html Regards, Daniel -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Tr

Re: [Pkg-emboss-devel] Re: EMBOSS 4.1.0 released

2007-03-10 Thread Daniel Leidert
Am Samstag, den 10.03.2007, 16:25 +0900 schrieb Charles Plessy: > Le Thu, Mar 08, 2007 at 10:21:58AM +0100, Andreas Tille a écrit : > > On Thu, 8 Mar 2007, Charles Plessy wrote: > > > > >EMBOSS uses an obsolete version of libpcre and the current packages > > >based on the work of Matt Hope ship by

Re: [Pkg-emboss-devel] Re: EMBOSS 4.1.0 released

2007-03-11 Thread Daniel Leidert
Am Sonntag, den 11.03.2007, 21:50 +0900 schrieb Charles Plessy: [..] > What is in your opinion the level of quality required for experimental > packages? The same as for sid. There are guidelines, that describe, in which case your package will be definitely rejected: http://ftp-master.debian.org/

Re: [Help] Please try to compile volpack with pdebuild

2007-08-03 Thread Daniel Leidert
Am Freitag, den 03.08.2007, 14:20 +0200 schrieb Andreas Tille: > On Fri, 3 Aug 2007, Daniel Leidert wrote: > > > ... the log alerady tells, what's going wrong. m4 is missing (see the > > configure output and the errors thrown, when m4 is called). > > A, thanks f

Re: [Help] Please try to compile volpack with pdebuild

2007-08-03 Thread Daniel Leidert
Am Freitag, den 03.08.2007, 14:58 +0200 schrieb Daniel Leidert: [..] > (3) examples/Makefile.am > > Should test.csh be run befoore making a distribution? Then you should > play with TESTS and TESTS_ENVIRONMENT variables or the check(-local) > target. $ fakeroot make distcheck

Re: [Help] Please try to compile volpack with pdebuild

2007-08-03 Thread Daniel Leidert
Am Freitag, den 03.08.2007, 15:22 +0200 schrieb Daniel Leidert: [..] > Further in Makefile.am: You should better use: [..] One more thing. IMHO you can define the (*)OBJS variables easier by using pattern substitution: COMP_OBJS = $(COMP_SRCS:.c=.o) Should AFAIK work with all m

Re: [Help] Please try to compile volpack with pdebuild

2007-08-03 Thread Daniel Leidert
Am Freitag, den 03.08.2007, 13:45 +0200 schrieb Daniel Leidert: [..] > ... the log alerady tells, what's going wrong. m4 is missing (see the > configure output and the errors thrown, when m4 is called). One word: The configure process should of course fail in this moment. config

Re: Automatic tarball retreival

2007-08-22 Thread Daniel Leidert
Am Dienstag, den 21.08.2007, 23:54 +0900 schrieb Charles Plessy: > Le Tue, Aug 21, 2007 at 10:42:04AM +0200, Steffen Moeller a écrit : > > > > For the direct use of svn-buildpackage it is only the source that is > > missing, > > isn't it? uscan should in most cases deliver that, probably move it

Re: Flooding SVN with upstream code

2007-09-21 Thread Daniel Leidert
Am Freitag, den 21.09.2007, 23:13 +0200 schrieb Andreas Tille: [..] > The Wiki just contains a further method (besides > >make -f debian/rules get-orig-source > > to obtain the original source: > >apt-get source --tar-only clustalw > > (BTW, if you want to have a look into the

Re: Packages in Debian-Med svn that cannot be redistributed?

2007-10-12 Thread Daniel Leidert
Am Freitag, den 12.10.2007, 13:01 +0200 schrieb Steffen Moeller: > Dear all, > > I am building basic Debian packages for about everything that I install on my > machine. As a consequence, there are Debian packages of software that may not > be redistributed. HMMTOP is one such example. However,

Re: SVN layout problems (change it?)

2007-11-02 Thread Daniel Leidert
Am Freitag, den 02.11.2007, 20:27 +0100 schrieb David Paleino: > I'm recently having some difficulties with our current SVN layout. In fact, I > like more SVN layout 2 (the one used by pkg-perl team, for example), than > ours. > > Here's the situation. > > Current layout: > > - trunk/ > -- pac

Re: SVN layout problems (change it?)

2007-11-03 Thread Daniel Leidert
Am Samstag, den 03.11.2007, 00:31 +0100 schrieb Daniel Leidert: > Am Freitag, den 02.11.2007, 20:27 +0100 schrieb David Paleino: [..] > > I might agree that we save space by avoiding duplication of source code, > > yes, > > but I find it far less intuitive to, for example, c

Re: Script to verify if we are up-to-date with upstream versions

2007-11-04 Thread Daniel Leidert
Am Sonntag, den 04.11.2007, 00:36 -0200 schrieb Nelson A. de Oliveira: > Below you will see the output of a (very ugly but functional) script that I > will run weekly. It will gets latest changelogs and watch files from SVN > and verify if we already have the latest upstream version. > Up to date

Re: Autoconf problem (Was: Packaging of aeskulap for Debian and dcmtk issue)

2007-11-07 Thread Daniel Leidert
Am Mittwoch, den 07.11.2007, 09:10 +0100 schrieb Andreas Tille: [http://people.debian.org/~tille/packages/aeskulap/] > $ autoreconf > /usr/share/aclocal/xmedcon.m4:13: warning: underquoted definition of > AM_PATH_XMEDCON > /usr/share/aclocal/xmedcon.m4:13: run info '(automake)Extending aclocal'

Re: Autoconf problem (Was: Packaging of aeskulap for Debian and dcmtk issue)

2007-11-14 Thread Daniel Leidert
Am Mittwoch, den 14.11.2007, 23:37 +0100 schrieb Andreas Tille: > On Tue, 13 Nov 2007, Juergen Salk wrote: > > > Yup. The Debian dcmtk packages are compiled with libwrap support. > > So you have to link against libwrap as well. > > Thanks to Jürgens hint I got the package builded and nearly > li

Re: Association between files and applications.

2008-01-13 Thread Daniel Leidert
Am Samstag, den 12.01.2008, 17:55 +0900 schrieb Charles Plessy: [..] > http://wiki.debian.org/DebianMedMIME Shall I add the chemical/* types to chemical MIME? They would then be available as of version 0.1.95 or above. If yes, can you provide some examples or send me an URL, where I can find exa

Re: Association between files and applications.

2008-01-13 Thread Daniel Leidert
Am Sonntag, den 13.01.2008, 16:19 +0100 schrieb Daniel Leidert: > Am Samstag, den 12.01.2008, 17:55 +0900 schrieb Charles Plessy: > > [..] > > http://wiki.debian.org/DebianMedMIME > > Shall I add the chemical/* types to chemical MIME? They would then be > available as of

Re: Association between files and applications.

2008-01-14 Thread Daniel Leidert
Am Montag, den 14.01.2008, 19:06 +0900 schrieb Charles Plessy: > Le Sun, Jan 13, 2008 at 04:25:44PM +0100, Daniel Leidert a écrit : [..] > > you MUST add the top-class, if they belong to a top-class (which seems > > to be the case for me): > > > > > > T

Re: Association between files and applications.

2008-01-14 Thread Daniel Leidert
Am Montag, den 14.01.2008, 09:53 +0100 schrieb Andreas Tille: > On Sun, 13 Jan 2008, Daniel Leidert wrote: > > > Oh wait, I see you followed my advice and used text/ for the MIME type > > and the chemical/* types only seem to be aliases. In this case you > > should add:

Re: MIME type for PDB files.

2008-01-15 Thread Daniel Leidert
Am Dienstag, den 15.01.2008, 13:43 +0900 schrieb Charles Plessy: > Le Mon, Jan 14, 2008 at 11:20:09AM -, Debian Wiki a écrit : > > The following page has been changed by SteffenMoeller: > > http://wiki.debian.org/DebianMedMIME > > > > + Can someone confirm/improve > > + > > + ||'''Suffix'''|

Re: MIME type for PDB files.

2008-01-15 Thread Daniel Leidert
Am Dienstag, den 15.01.2008, 20:33 +0900 schrieb Charles Plessy: > Le Tue, Jan 15, 2008 at 12:08:35PM +0100, Daniel Leidert a écrit : > > > > What should be necessary? > > To check for the presence of words other than `HEADER' in the first line > of pdb files. Well

Re: MIME type for PDB files.

2008-01-15 Thread Daniel Leidert
Am Dienstag, den 15.01.2008, 14:10 +0100 schrieb Morten Kjeldgaard: > > > > as per .pdb format version 2.3, all records must start with a HEADER > > field. > > Actually, a valid PDB format file must start with a HEADER record. > All records must start with a max 6 character long record type, i.e

Re: MIME type for PDB files.

2008-01-15 Thread Daniel Leidert
Am Mittwoch, den 16.01.2008, 08:54 +0900 schrieb Charles Plessy: > Le Tue, Jan 15, 2008 at 02:28:24PM +0100, Daniel Leidert a écrit : [..] > > Well, I personally think, that we should *not* try to detect all broken > > formats, because companies/authors should better fix their sof

Re: MIME and Applied Biosystems chromatograms.

2008-01-20 Thread Daniel Leidert
Charles Plessy wrote: > I tried to do with sequence chromatograms what I did with alignments and > trees, but in that case something is going wrong. The MIME part itself > works: an attachement of the application/x-dna or application/ab1 type > can be displayed with abiview (emboss package). Howe

Re: MIME and Applied Biosystems chromatograms.

2008-01-20 Thread Daniel Leidert
Am Montag, den 21.01.2008, 11:58 +0900 schrieb Charles Plessy: > Hi Daniel, many thanks for your precious answers. I have some more ;) > Le Mon, Jan 21, 2008 at 02:19:33AM +0100, Daniel Leidert a écrit : > > Ok, first thing, I guess you are referring to this form

Re: MIME and Applied Biosystems chromatograms.

2008-01-20 Thread Daniel Leidert
Am Montag, den 21.01.2008, 04:44 +0100 schrieb Daniel Leidert: > Am Montag, den 21.01.2008, 11:58 +0900 schrieb Charles Plessy: [..] > > For the applicaiton/ab1 type, it was a typo. Some sites ask their users > > to configure their browsers to use application/abi1, so I will decl

Re: MIME and Applied Biosystems chromatograms.

2008-01-20 Thread Daniel Leidert
Am Montag, den 21.01.2008, 04:53 +0100 schrieb Daniel Leidert: [..] > Argh. RfC-compliant: > > application/vnd.appliedbiosystems.abif > ^ > or similar (note the punctuation). Attached is, what I would suggest, using the short form for comme

Re: MIME and Applied Biosystems chromatograms.

2008-01-21 Thread Daniel Leidert
Am Montag, den 21.01.2008, 18:48 +0900 schrieb Charles Plessy: > Le Mon, Jan 21, 2008 at 04:44:52AM +0100, Daniel Leidert a écrit : [..] > > Ok. Here something comes to my mind I forgot to tell you. Vendors are > > allowed to use the "vnd." prefix (also written in one of

Re: [Debian-med-packaging] emboss_5.0.0-4_powerpc.changes REJECTED

2008-01-26 Thread Daniel Leidert
Am Samstag, den 26.01.2008, 13:50 +0900 schrieb Charles Plessy: > Le Sat, Jan 26, 2008 at 04:32:07AM +, Debian Installer a écrit : > > > > Rejected: dm:[EMAIL PROTECTED] may not upload/NMU source package emboss [..] > I do not understand why it failed: > > - It says dm:[EMAIL PROTECTED], so

Re: [Debian-med-packaging] emboss_5.0.0-4_powerpc.changes REJECTED

2008-01-26 Thread Daniel Leidert
Am Samstag, den 26.01.2008, 23:15 +0900 schrieb Charles Plessy: > Le Sat, Jan 26, 2008 at 02:44:30PM +0100, Daniel Leidert a écrit : > > I'm not sure (did not look at dak source), but maybe the > > uppercase-starting "Yes" makes the differences. To my knowledge I just

Re: Group policy draft

2008-01-29 Thread Daniel Leidert
Am Dienstag, den 29.01.2008, 12:56 +0100 schrieb David Paleino: > Hi all, > as you might have seen, r1213 introduces a "Group Policy". As many other teams > have one, I felt the need of writing one for us. Consider it still a draft > (anyone knows Foo Bar? ;) ), it can be improved in many ways. >

Re: [med-svn] r1219 - in trunk/packages/axparafit/trunk: . debian debian/patches

2008-01-30 Thread Daniel Leidert
Am Mittwoch, den 30.01.2008, 20:37 +0900 schrieb Charles Plessy: > just a few comments: I would like to add some more. > Le Wed, Jan 30, 2008 at 10:54:18AM +, [EMAIL PROTECTED] a écrit : > > > > Added: trunk/packages/axparafit/trunk/debian/axparafit.1.xml > > ===

Re: MIME types and Applied Biosystems chromatograms.

2008-01-31 Thread Daniel Leidert
Am Dienstag, den 22.01.2008, 13:24 +0900 schrieb Charles Plessy: > Dear Software Communauty support, > > I am a member of the Debian-Med project, and would like to enquire about > two related questions: > > 1) The definition of a MIME type for .ab1 files. > 2) The auto-detection of ABIF chromat

Re: [med-svn] r1219 - in trunk/packages/axparafit/trunk: . debian debian/patches

2008-01-31 Thread Daniel Leidert
Am Donnerstag, den 31.01.2008, 10:04 +0900 schrieb Charles Plessy: > Le Wed, Jan 30, 2008 at 06:57:48PM +0100, Daniel Leidert a écrit : > > > > --param man.charmap.use.subset "0" > > > > to replace *all* special characters. Otherwise only a subset of the >

Re: New tool

2008-01-31 Thread Daniel Leidert
Am Donnerstag, den 31.01.2008, 21:22 +0100 schrieb David Paleino: [..] > Please take a look at: > > Interesting. Who wrote it? JFTR: The resulting XHTML is not valid: http://schneegans.de/sv/?url=http%3A%2F%2Fdebian-med.alioth.debian.or

Re: Group policy draft

2008-02-01 Thread Daniel Leidert
Am Freitag, den 01.02.2008, 21:17 +0900 schrieb Charles Plessy: [..] > If yes, could a SVN guru prevent the .pdf documents from being diffed ? Not a guru and not sure, but try setting the svn:mime-type property for the file to application/pdf. Regards, Daniel -- To UNSUBSCRIBE, email to [EMAI

Re: AutoDock - comments on packaging, please.

2008-02-29 Thread Daniel Leidert
Am Freitag, den 29.02.2008, 10:58 +0100 schrieb Steffen Moeller: > if some of you could cross-check my packaging of AutoDock, please? Any > feedback that would prevent a rejection from our ftp-gate would be > appreciated. I personally think that it is fine but I have overseen > issues in the past.

Re: Out-dated web content

2008-03-10 Thread Daniel Leidert
Am Montag, den 10.03.2008, 19:05 +0200 schrieb Menelaos Maglis: > http://www.debian.org/devel/debian-med/dental > > refers to GNU Dental (http://www.gnudental.org/) a project no longer in > existence. Well, http://code.google.com/p/gnudental/ seems to be the place (now). Adjusting the link is m

Re: Jmol Pakete?

2008-03-13 Thread Daniel Leidert
CCed Egon Am Donnerstag, den 13.03.2008, 07:20 +0100 schrieb Andreas Tille: > under > > http://debian-med.alioth.debian.org/tasks/bio.php#jmol > > we link to unoffcial jmol packages that once were created by you but > the link > > http://debian.wgdd.de/debian/dists/unstable/contrib/bin

Re: debian/compat and CDBS.

2008-03-17 Thread Daniel Leidert
Am Montag, den 17.03.2008, 18:53 +0900 schrieb Charles Plessy: > Le Mon, Mar 17, 2008 at 10:03:47AM +0100, Andreas Tille a écrit : > > On Mon, 17 Mar 2008, Charles Plessy wrote: > > > > >cdbs does not need debian/compat and will chose the highest level > > >available. I tend to remove compat files

Re: Mime types for medical data formats

2008-03-31 Thread Daniel Leidert
Am Montag, den 31.03.2008, 08:10 +0200 schrieb Andreas Tille: > I recently learned that file has obviosely no means for detecting biological > data formats. Three months ago we had some discussions about Applied > Biosystems chromatograms[1]. This thread more or less had ended with: We > are wai

Re: Mime types for medical data formats

2008-03-31 Thread Daniel Leidert
Am Montag, den 31.03.2008, 15:56 +0200 schrieb Andreas Tille: > On Mon, 31 Mar 2008, Daniel Leidert wrote: > > > As long as there is no agreement with upstream, you can use the > > > > a) x- prefix approach > > b) vnd. vendor approach > > > > Both are d

Re: Download page of biomode vanished

2008-05-08 Thread Daniel Leidert
Am Donnerstag, den 08.05.2008, 09:33 +0200 schrieb Andreas Tille: > http://www.bio.net/bionet/mm/bio-soft/1998-April/018625.html > > It seems that biomode is not longer developed and thus I wonder how > much sense it makes to continue maintaining the package in Debian. > I would be perfectly

Re: How to handle Debian patches

2008-05-17 Thread Daniel Leidert
Am Samstag, den 17.05.2008, 23:43 +0200 schrieb Andreas Tille: > On Sat, 17 May 2008, Charles Plessy wrote: > > > since it makes complete sense I propose the followign addition to our > > policy: > > I also perfectly agree and I might have missed something in the quilt docs > but this aspect seem

Re: How to handle Debian patches

2008-05-18 Thread Daniel Leidert
Am Sonntag, den 18.05.2008, 20:02 +0900 schrieb Charles Plessy: > Le Sun, May 18, 2008 at 01:01:09AM +0200, Daniel Leidert a écrit : > > > > You should further add a good description of the patch to > > debian/changelog. This is the first place one will take a look and it

Re: Patch format

2008-05-18 Thread Daniel Leidert
Am Sonntag, den 18.05.2008, 12:27 +0200 schrieb David Paleino: [..] > Can we standardize the patch header? Be it quilt, dpatch, $foo, the header > might be something like: > > Author: > Forwarded: > Description: I personally prefer to follow the GNU coding standards here [1] for patch descriptio

Re: Patch format

2008-05-19 Thread Daniel Leidert
Am Montag, den 19.05.2008, 13:22 +0900 schrieb Charles Plessy: > Le Sun, May 18, 2008 at 11:50:37PM +0200, Daniel Leidert a écrit : > > Am Sonntag, den 18.05.2008, 12:27 +0200 schrieb David Paleino: > > > > [..] > > > Can we standardize the patch header? Be it q

Re: Patch format

2008-05-19 Thread Daniel Leidert
Am Montag, den 19.05.2008, 13:00 +0200 schrieb Andreas Tille: > On Mon, 19 May 2008, Daniel Leidert wrote: > > > Yeah, exactly. And a Changelog entry is nothing else than a change > > description ... exactly what you try to achieve - describe, what apatch > > does/chang

Re: Problem with implicit rule for .o files and overriding of CXXFLAGS.

2008-06-26 Thread Daniel Leidert
Sorry for the CC. I was away and missed the discussion :) Am Mittwoch, den 25.06.2008, 13:24 +0900 schrieb Charles Plessy: > while working on an update to the `proda' package, I realised that a > compilation option, DVERSION="\"1.00\"", was discarded during the build > of the Debian binary packag

Re: Problem with implicit rule for .o files and overriding of CXXFLAGS.

2008-06-27 Thread Daniel Leidert
Am Freitag, den 27.06.2008, 10:16 + schrieb Yavor Doganov: > В Thu, 26 Jun 2008 23:14:55 +0200, Daniel Leidert написа: > > > or tell him to better use one of the following: > > > > DEFS += -DVERSION="\"1.00\"" > > This won't work. Th

Re: [med-svn] r2225 - trunk/packages/biojava/trunk

2008-07-13 Thread Daniel Leidert
Am Sonntag, den 13.07.2008, 17:55 +0200 schrieb Andreas Tille: [..] > But if there is packaging stuff somewhere in SVN you should probably use > the external feature of SVN. I just used this for > > svn://svn.debian.org/cdd/projects/edu > > because debiian-edu source is not maintained und

Re: New name: Call for opinions

2008-08-25 Thread Daniel Leidert
Am Montag, den 25.08.2008, 11:46 +0200 schrieb Free Ekanayaka: > Hi, > > |--==> On Tue, 19 Aug 2008 00:39:03 +0200 (CEST), Andreas Tille <[EMAIL > PROTECTED]> said: > > AT> On Mon, 18 Aug 2008, Karsten Hilbert wrote: > >>>Use your energy to write better software, to marketeer the current nam

Re: Added README.source to our group policy.

2008-11-13 Thread Daniel Leidert
Am Donnerstag, den 13.11.2008, 13:37 +0900 schrieb Charles Plessy: > Hi all, > > I added the following paragraph to our Policy. > (I suppose it is consensual) I'm not part of debian-med. However, I hope you don't mind this mail: [..] > + > + debian/README.source

Re: Added README.source to our group policy.

2008-11-13 Thread Daniel Leidert
Am Donnerstag, den 13.11.2008, 19:47 +0900 schrieb Charles Plessy: > Le Thu, Nov 13, 2008 at 10:42:37AM +0100, Daniel Leidert a écrit : > > > > IMHO this is a misuse of this file. The contents of README.source should > > point to unusual/uncommon source handling, includin

Manual page issues in the SVN

2008-11-21 Thread Daniel Leidert
Hi, A short look into the manual pages hosted in the debian-med SVN repository revealed several issues: - broken whatis entries (e.g. ballview.1, dash in the NAME section is unescaped - note, that in this section, there should be just *one* escaped dash; in the other sections, you have to escape

Re: [med-svn] r2775 - trunk/packages/velvet/trunk/debian

2008-12-12 Thread Daniel Leidert
Am Freitag, den 12.12.2008, 20:55 +0900 schrieb Charles Plessy: > Le Fri, Dec 12, 2008 at 12:52:12PM +0100, Mathieu Malaterre a écrit : > > > > > > -DEB_MAKE_BUILD_TARGET = obj velveth velvetg Z_LIB_FILES='' LDFLAGS='-lm > > > -lz' > > > +DEB_MAKE_BUILD_TARGET = obj velveth velvetg Z_LIB_FILES=''

Re: /etc/magic for scientific data

2008-12-12 Thread Daniel Leidert
Am Freitag, den 12.12.2008, 18:03 +0100 schrieb Steffen Moeller: > Hello, > > I am so busy that I followed my attention deficit disorder a bit and came up > with those > magic for the "file" command. They seem to work. Before I place a wishlist to > file, please > be so kind to check them for me

Re: Bug#507436: ITP: jalview -- multiple alignment editor

2009-01-16 Thread Daniel Leidert
Am Dienstag, den 13.01.2009, 13:25 +0100 schrieb Manuel Prinz: [..] > > ./lib/xml-apis.jar > > Sounds like Xalan, maybe available in libxalan2-java. JFTR: libxalan2-java ships the symlink. The .jar is in libjaxp1.3-java. Regards, Daniel -- To UNSUBSCRIBE, email to debian-med-requ...@lists.de

Re: Bug#507436: ITP: jalview -- multiple alignment editor

2009-01-16 Thread Daniel Leidert
Am Dienstag, den 13.01.2009, 14:00 +0100 schrieb Andreas Tille: > On Tue, 13 Jan 2009, Vincent Fourmond wrote: [..] > > ./lib/Jmol-11.0.2.jar > > We have an inofficial package of an outdated version of jmol: > > http://debian.wgdd.de/temp/jmol/ That's not a "package". You asked for the sour

Re: How to debug problems in postinst using debconf / dbconfig common

2009-01-23 Thread Daniel Leidert
Andreas Tille wrote: > I try to build a package from mlstdbnet for Debian Med. The > packaging stuff is available here: [..] > If I build the package I get an error message but failed > to track down the problem: > > ~> sudo dpkg -i mlstdbnet_2.0.0-1_all.deb > (Reading database ... 341999 files a

Re: Bug#512930: ITP: jmol -- java molecular graphics system

2009-01-25 Thread Daniel Leidert
Am Sonntag, den 25.01.2009, 16:55 +0100 schrieb Vincent Fourmond: [..] > Unfortunately, not yet. I have two small problems in the source tarball: > > * jars/netscape.jar > * jars/Acme.jar > > I didn't really look deeply into the rest yet, but it seems fine. Do > you have any idea of wher

Re: VTK 5.2.1 update / debian bug #516766

2009-03-09 Thread Daniel Leidert
Am Montag, den 09.03.2009, 14:14 +0100 schrieb Mathieu Malaterre: > Thanks to A. Maitland Bottoms for updating the VTK package ! > While reading the log of ITK debian package, I think that the bug > also apply to VTK package. AFAIK vtk is installing itself directly in > python-support. > >

Re: VTK 5.2.1 update / debian bug #516766

2009-03-09 Thread Daniel Leidert
Am Montag, den 09.03.2009, 15:14 +0100 schrieb Daniel Leidert: > Am Montag, den 09.03.2009, 14:14 +0100 schrieb Mathieu Malaterre: [..] > > On a different note, I thought I did the right thing for the > > vtkpython manpage, but apparently it is not being picked up

Re: Again: Bug#503367: plink: file conflict with putty-tools

2009-04-02 Thread Daniel Leidert
Andreas Tille wrote: > in October last year there was a longish discussion about name space > pollution regarding plink. If you like to spend some time you should > read the complete log of #503367 [1]. > > I decided to put an end now on this issue to make sure it will > not remain as is for eve

Re: Again: Bug#503367: plink: file conflict with putty-tools

2009-04-02 Thread Daniel Leidert
Andreas Tille wrote: > On Thu, 2 Apr 2009, Daniel Leidert wrote: [..] > > What about using /usr/bin/PLINK? I can't find a requirement in the > > policy to use lowercase characters for a binary/script. Maybe I missed > > it? > > A Plink was discussed and re

Re: Version numbering scheme according to date

2009-05-01 Thread Daniel Leidert
Andreas Tille wrote: > I also follow the adivise I've got > some years ago to use: 0.0.MMDD - this is nearly save if > upstream starts using real version numbers. NACK. 0.0.1 < 0.0.2009XXYY "Really" safe is 0~mmdd or even 0+mmdd. This is what I would suggest. We use this for tarballs

Re: Version numbering scheme according to date (Was: [med-svn] r3340 - in trunk/packages/phyml: tags trunk/debian)

2009-05-01 Thread Daniel Leidert
Charles Plessy wrote: [..] > It will be much much easier for us to track your future updates if you > would invert your versionning dates: MMDD instead of DDMM. Well, you can simply do this in debian/watch via uversionmangle. Maybe using conditional subpattern or lookahead/behind assertio

Re: Bug dependencie

2009-05-21 Thread Daniel Leidert
Am Dienstag, den 19.05.2009, 15:39 +0200 schrieb Andreas Tille: > On Tue, May 19, 2009 at 01:58:54PM +0200, Mathieu Malaterre wrote: > > http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=529292 > > > > How should I handle that ? > > I mean, once bug #529292 is fixed/closed, what should be the >

Re: dh_installman / *.manpages

2009-06-15 Thread Daniel Leidert
Am Montag, den 15.06.2009, 20:37 +0200 schrieb Mathieu Malaterre: [..] > If you svn-buildpackage gdcm right now (dh_installman is commented out). I > get: > > dh_install > --sourcedir=/home/mathieu/Projects/debian-med/trunk/packages/gdcm/build-area/gdcm-2.0.12/debian/tmp > --fail-missing > dh_i

Re: more formally indicating the registration URL

2009-08-01 Thread Daniel Leidert
Am Samstag, den 01.08.2009, 23:29 +0900 schrieb Charles Plessy: [..] > The key problem is that the metadata can evolve independantly of the source > code, and that updating the binary packages just for changing URLs is not > suitable. Well, if upstream chooses to change a registration URL, they s

Re: debian-med newbie seeks advice on where to place packages

2009-08-11 Thread Daniel Leidert
Am Dienstag, den 11.08.2009, 15:55 -0400 schrieb K.S. Bhaskar: > it appears that I should put it in subdirectories of /opt/gtm, but it > could just as easily be argued that it belongs in /usr/local/bin/gtm. Debian uses /usr. Packages do not put stuff under /usr/local - maybe except empty direc

Re: Bug#541239: ITP: GT.M -- Database Engine withExtremeScalability and Robustness

2009-08-14 Thread Daniel Leidert
Am Freitag, den 14.08.2009, 08:08 +0200 schrieb Andreas Tille: > On Thu, Aug 13, 2009 at 04:03:11PM -0400, K.S. Bhaskar wrote: > > GT.M Highly scalable and robust associative memory database platform and > > MUMPS implentation? > > I like this as short description (and hope it is not to long).