Hi Étienne,
On Thu, Jul 23, 2020 at 12:45:13AM +0200, etienne.moll...@mailoo.org wrote:
> Before I go to sleep, ...
Hope you slept well. Meanwhile I've uploaded your fine work on dialign-t. ;-)
Thanks a lot
Andreas.
--
http://fam-tille.de
Hi folks,
csh dependencies are usually unneeded and are creating boring noise in
all its reverse dependencies. Lots of our packages are depending from
mummer and all those are now affected from a potential testing removal
for the only reason that mummer upstream has a preference for csh over
POSI
On 23/07/2020 07:56, Andreas Tille wrote:
Hi Tony,
On Wed, Jul 22, 2020 at 11:46:03PM +0100, Tony Travis wrote:
Analysis finished: Mon Jul 20 13:56:47 2020
Create sativas_GWAS.covar file...
smartpca -p sativas_GWAS.par > sativas_GWAS-smartpca.log
OOPS -i flag not specified at /usr/bin/smartpca
Hi Andreas,
Andreas Tille, on 2020-07-23 09:30:08 +0200:
> csh dependencies are usually unneeded and are creating boring noise in
> all its reverse dependencies. Lots of our packages are depending from
> mummer and all those are now affected from a potential testing removal
> for the only reason
Hi Andreas,
Andreas Tille, on 2020-07-23 09:02:05 +0200:
> On Thu, Jul 23, 2020 at 12:45:13AM +0200, etienne.moll...@mailoo.org wrote:
> > Before I go to sleep, ...
>
> Hope you slept well. Meanwhile I've uploaded your fine work on dialign-t. ;-)
Fair enough, although UTC+2 is not my favourite
Hi Tony,
On Thu, Jul 23, 2020 at 11:41:40AM +0100, Tony Travis wrote:
> On 23/07/2020 07:56, Andreas Tille wrote:
> > > > Create sativas_GWAS.covar file...
> > > > smartpca -p sativas_GWAS.par > sativas_GWAS-smartpca.log
> > > > OOPS -i flag not specified at /usr/bin/smartpca line 21.
> > > > piqu
Hi Étienne,
On Thu, Jul 23, 2020 at 12:48:24PM +0200, etienne.moll...@mailoo.org wrote:
>
> Even though the case for Csh has just been sorted,
I confirm that I did not intended to blame csh maintainers beeing lazy.
The issues are usually set quickly. Its just that the inbox of
subscribers of th
Hi,
I had packaged unifrac a few weeks ago at the team-repo.
It builds fine however I see these lintian errors which I've no idea about:
E: libssu0: custom-library-search-path usr/bin/faithpd
/usr/lib/x86_64-linux-gnu/hdf5/serial
E: libssu0: custom-library-search-path usr/bin/ssu
/usr/lib/x86_64-l
Hi,
I've fixed gcc-10 FTBFS for mlv-smile as reported here in #957551.
Additionally, I added in autopkgtests as well - builds with passing tests.
I've pushed my changes to the team-repo[1]
Please:
gbp clone --pristine-tar https://salsa.debian.org/med-team/mlv-smile
OR
Grant DM access: PGP key fi
Hi Andreas,
Andreas Tille, on 2020-07-23 14:43:18 +0200:
> On Thu, Jul 23, 2020 at 12:48:24PM +0200, etienne.moll...@mailoo.org wrote:
> > Even though the case for Csh has just been sorted,
>
> I confirm that I did not intended to blame csh maintainers beeing lazy.
> The issues are usually set qu
On Mon, Jun 15, 2020 at 09:07:12AM +0200, Andreas Tille wrote:
> Control: tags -1 upstream
> Control: forwarded -1
> https://github.com/PacificBiosciences/FALCON_unzip/issues/160
>
> Antoni, thanks for opening the issue, Andreas.
Hi,
https://github.com/PacificBiosciences/FALCON_unzip/issues/160
Good News Andreas,
etienne.moll...@mailoo.org, on 2020-07-23 19:14:53 +0200:
> Andreas Tille, on 2020-07-23 14:43:18 +0200:
> > On Thu, Jul 23, 2020 at 12:48:24PM +0200, etienne.moll...@mailoo.org wrote:
> > > I happily
> > > volunteer to have a look at mummer, or any other package
> > > depending
Hello everyone,
I have packaged the new upstream version of jebl2, available in the
repository
https://salsa.debian.org/med-team/jebl2
Could you please see and upload? Apart the new upstream version, there
is just an update of the compat level.
Regards,
Pierre
On Thu, Jul 23, 2020 at 06:16:02PM +, Antoni Villalonga wrote:
> Hi,
>
> https://github.com/PacificBiosciences/FALCON_unzip/issues/160#issuecomment-662481212
>
> > Christopher Dunn (pb-cdunn):
> >
> > We have pushed the latest falcon code-base for python3. If that helps, you
> > are free to
On Thu, Jul 23, 2020 at 07:14:52PM +0200, etienne.moll...@mailoo.org wrote:
> I actually have a bit of a decade old history with Csh, hence my
> having stronger feelings about it than usual perhaps. But no
> worries, I didn't intend to put any blame of any sort on anyone
> neither.
Just to be cle
Hi Étienne,
On Thu, Jul 23, 2020 at 09:54:07PM +0200, etienne.moll...@mailoo.org wrote:
> > Let's see what I agreed to... :)
>
> I had a look at the mummer package, and actually everything
> seems to be already in place to remove the dependency on csh.
> The Med Team did all the hard work in the
Hi Andreas,
Andreas Tille, on 2020-07-23 22:51:06 +0200:
> Sounds very good - but I think you forgot to push this new branch.
Whooops, I blindly trusted salsa push, and didn't check the
branch landed on the repository. Sorry about that
I ran a git push --all, this seems to be good now.
Cheers,
Hi Pierre,
On Thu, Jul 23, 2020 at 10:18:00PM +0200, Pierre Gruet wrote:
> I have packaged the new upstream version of jebl2, available in the
> repository
>
> https://salsa.debian.org/med-team/jebl2
>
> Could you please see and upload? Apart the new upstream version, there
> is just an update o
Hi Andreas,
Andreas Tille, on 2020-07-23 22:47:44 +0200:
> Just to be clear about this: I'm fine with any shell as personal user
> environment and every shell has it pros and cons. However, writing
> scripts for a wider audience should simply be written in POSIX shell
> (also without any bash sp
On 23/07/2020 13:37, Andreas Tille wrote:
[...]
The "pique-input" script should be running /usr/lib/eigensoft/smartpca, not
/usr/bin/smartpca and my version does:
I'll check this. However, in principle I do not consider it the best
idea to use some program that is private to eigensoft and ign
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