[RFS] seq-gen

Hi, I've added autopkgtests for seq-gen and this builds in a clean chroot with passing tests. The changes have been pushed here[1]. Needs review and sponsorship. [1]: https://salsa.debian.org/med-team/seq-gen Thanks and regards Nilesh

Can someone look into fixing python script tests in libsonlib? (Was: Re: sonLib_daemonize.py goes missing before build)

Hello Andreas, > Sounds good. I've opened an ITP for libsonlib. > > To finalise the package please remove the test suite binaries from > /usr/bin. As extra bonus you could recreate those binaries in > autopkgtest which is currently non-functional. If this turns out to > much work please remove

Re: [Help Needed] unifrac

Hi Aaron On Thu, 25 Jun 2020, 01:34 Aaron M. Ucko, wrote: > Nilesh Patra writes: > > > h5c++ -shared -o libssu.so tree.o biom.o unifrac.o cmd.o unifrac_task.o > > api.o -lc -lhdf5_cpp -L/lib > > Please try adding the h5c++ flag -shlib (which its manual page neglects > to mention as a possibilit

Re: [RFS] seq-gen

Hi Nilesh, On Thu, Jun 25, 2020 at 08:38:58PM +0530, Nilesh Patra wrote: > Hi, > I've added autopkgtests for seq-gen and this builds in a clean chroot with > passing tests. Thanks for your work on this. Unfortunately I doubt that the effort to add tests to packages in non-free is a waste of time

[RFS] libaparapi-java

Dear all, I have pushed the initial packaging of libaparapi-java to Salsa [0], I would need a review and an upload if time permits. This is a dependency of apfloat (to be packaged), which is a dependency of SpnEff that we would like to get packaged. libaparapi-java builds two binary packages.

Re: [RFS] seq-gen

Hi On Fri, 26 Jun 2020, 01:48 Andreas Tille, wrote: > Hi Nilesh, > > On Thu, Jun 25, 2020 at 08:38:58PM +0530, Nilesh Patra wrote: > > Hi, > > I've added autopkgtests for seq-gen and this builds in a clean chroot > with > > passing tests. > > Thanks for your work on this. Unfortunately I doubt

Re: [RFS] libaparapi-java

Hi Pierre, On Thu, Jun 25, 2020 at 10:20:46PM +0200, Pierre Gruet wrote: > I have pushed the initial packaging of libaparapi-java to Salsa [0], I > would need a review and an upload if time permits. I'd love to help as quick as possible. > This is a dependency of apfloat (to be packaged), which

Re: [RFS] seq-gen

Well the data and docs look non-free - will ask upstream. On Fri, 26 Jun 2020, 02:17 Nilesh Patra, wrote: > Hi > > On Fri, 26 Jun 2020, 01:48 Andreas Tille, wrote: > >> Hi Nilesh, >> >> On Thu, Jun 25, 2020 at 08:38:58PM +0530, Nilesh Patra wrote: >> > Hi, >> > I've added autopkgtests for seq-g

Re: [RFS] seq-gen

On Fri, Jun 26, 2020 at 02:33:52AM +0530, Nilesh Patra wrote: > Well the data and docs look non-free - will ask upstream. We might get rid of the docs - but if we need the data these should be published with a free license. > On Fri, 26 Jun 2020, 02:17 Nilesh Patra, wrote: > > > While we will