Hi Steffen,
On Sat, Jun 20, 2020 at 01:47:07AM +0200, Steffen Möller wrote:
> it builds, it tests, but it does not build in cowbuilder and I am [after
> some trying] left clueless why this is.
I had a short look on this and I have a question: The git repository
contains a lot of files that shoul
Hi,
we are lagging several upstream versions behind due to new dependencies
and other build issues. I wonder whether somebody might volunteer to
update artemis. It would be great to get the latest version at least
before the freeze starts. While this takes some time I guess having
latest artemi
Hi Andreas,
I would be happy to help on artemis. Obviously I will need
a more experienced developer helping me. :)
Cheers!
Emmanuel
Cheers,
Arias Emmanuel
@eamanu
yaerobi.com
On Mon, Jun 22, 2020 at 9:17 AM Andreas Tille wrote:
> Hi,
>
> we are lagging several upstream versions behind du
Hi Shayan,
you asked about the packaging status of libsonlib since you need it for
marginphase. I pushed something which somehow creates some binary
package containing some header files and a static library.
It builds if you uncomment the building of libquicktree-dev[1]
(or just checkout commit
Hi Emmanuel,
On Mon, Jun 22, 2020 at 10:57:15AM -0300, Emmanuel Arias wrote:
> I would be happy to help on artemis. Obviously I will need
> a more experienced developer helping me. :)
I'll try hard to answer any question you might rise here on
this list (no matter how basic it might be) if you vo
u...@debian.org (Aaron M. Ucko) writes:
> override_dh_auto_test:
Oops, I accidentally left the leading - in place and omitted an
environment variable one or two tests will need to work fully offline;
please make that
override_dh_auto_test:
NCBI_CONFIG__GENBANK__PREOPEN=false dh_auto_test
Hi Emmanuel,
Le 22/06/2020 à 16:30, Andreas Tille a écrit :
> Hi Emmanuel,
>
> On Mon, Jun 22, 2020 at 10:57:15AM -0300, Emmanuel Arias wrote:
>> I would be happy to help on artemis. Obviously I will need
>> a more experienced developer helping me. :)
>
> I'll try hard to answer any question you
Hi Andreas,
On 22.06.20 10:10, Andreas Tille wrote:
Hi Steffen,
On Sat, Jun 20, 2020 at 01:47:07AM +0200, Steffen Möller wrote:
it builds, it tests, but it does not build in cowbuilder and I am [after
some trying] left clueless why this is.
I had a short look on this and I have a question: T
Hello Andreas,
>I think the way to finalise libsonlib would be to find out whether
>there are any sensible binaries in /usr/bin and leave these (if
>they are not just tests) and may be write some manpage (using
>help2man - no real effort to write it manually!)
None of these binari
Hi Shayan,
On Mon, Jun 22, 2020 at 07:11:23PM +0100, Shayan Doust wrote:
> Some problems. Unfortunately, [https://github.com/ArtRand/sonLib] is
> what is in the watch file for sonlib. The original author's library is
> located here [https://github.com/benedictpaten/sonLib], which is
> substantiall
Hi Steffen,
On Mon, Jun 22, 2020 at 06:50:03PM +0200, Steffen Möller wrote:
>
> I have just done that and updated the archive. I just saw lintian errors
> on empty man pages (added to d/TODO) that need some investigation and
> the build with cowbuilder.
Strange, if I build in cowbuilder I get:
Hi Aaron,
On Mon, Jun 22, 2020 at 10:53:49AM -0400, Aaron M. Ucko wrote:
> > override_dh_auto_test:
>
> Oops, I accidentally left the leading - in place and omitted an
> environment variable one or two tests will need to work fully offline;
> please make that
>
> override_dh_auto_test:
> N
Andreas Tille writes:
> ERR [1] -- [objects/genomecoll/gc_cli] test_gencoll_svc_ASSM (real 0.04,
> user 0.03, sys 0.00)
This is one of the tests that requires a network connection, and as such
will fail on the autobuilders unless trimmed altogether. The available
offline tests are
OK --
Hi,
I find more and more packages in need of python3-mappy which is
build by minimap2 but to succeed here ksw2 is needed. It would
be great if somebody would take over here.
Kind regards
Andreas.
On Mon, Jun 15, 2020 at 09:08:56AM +0200, Andreas Tille wrote:
> Hi Steffen,
>
> On Fri,
On 22.06.20 21:59, Andreas Tille wrote:
Hi Steffen,
On Mon, Jun 22, 2020 at 06:50:03PM +0200, Steffen Möller wrote:
I have just done that and updated the archive. I just saw lintian errors
on empty man pages (added to d/TODO) that need some investigation and
the build with cowbuilder.
Strang
Hi Aaron,
On Mon, Jun 22, 2020 at 05:29:53PM -0400, Aaron M. Ucko wrote:
> Andreas Tille writes:
>
> > ERR [1] -- [objects/genomecoll/gc_cli] test_gencoll_svc_ASSM (real
> > 0.04, user 0.03, sys 0.00)
>
> This is one of the tests that requires a network connection, and as such
> will fail
Hi again,
On Sat, Jun 20, 2020 at 09:49:02PM -0400, Aaron M. Ucko wrote:
Seems I stopped reading from here on. May be I was distracted ...
Sorry for repeating myself.
> > Is there any chance to skip the build of makeblastdb to save computing
> > power and time if we ignore the build result any
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