Re: bedtools version 2.18.0

2013-12-15 Thread Andreas Tille
Hi, On Sat, Dec 14, 2013 at 07:23:08PM +0100, Thorsten Alteholz wrote: > > DFSG 2 says that the source must be included. So if the PNG has been > created, for example with gimp, there should be an XCF file > available and part of the package ... As long as the author of the graphic really stores

Fis-gtm accepted in unstable (Was: Packaging VistA - GT.M directories)

2013-12-15 Thread Andreas Tille
Hi, finally we have a nice Christmas gift for all people dealing with VistA: fis-gtm is now accepted in unstable. Now it is time to work on reasonable VistA packages and we *really* need to rely on upstream to let this happen. I think we should start now(ish) on this heavy task since the time to

Re: Fis-gtm accepted in unstable

2013-12-15 Thread Amul Shah
Andreas, > On Dec 15, 2013, at 1:18 PM, Andreas Tille wrote: > > Hi, > > finally we have a nice Christmas gift for all people dealing with VistA: > fis-gtm is now accepted in unstable. Excellent news! Regarding fis-gtm, what work remains for the existing packaging? Off the top my head I kn

Re: Fis-gtm accepted in unstable

2013-12-15 Thread Luis Ibanez
This is great news !! Many thanks for all your hard work on making this happen ! Luis On Sun, Dec 15, 2013 at 3:43 PM, Amul Shah wrote: > Andreas, > > > On Dec 15, 2013, at 1:18 PM, Andreas Tille wrote: > > > > Hi, > > > > finally we have a nice Christmas gift for all people dealing with

Re: Fis-gtm accepted in unstable

2013-12-15 Thread Bhaskar, K.S
Yes, thanks to all, and especially Andreas Tille, Amul Shah, Luis IbaƱez and Brad King. And now on to VistA, which I will try to take on. Let me think about the right flavor, though. There is a code convergence project to merge the various flavors ( http://www.osehra.org/group/code-convergen

Re: Fis-gtm accepted in unstable

2013-12-15 Thread Luis Ibanez
Yes ! now on to VistA. FWIW, here is what I started crafting for it a while ago: https://github.com/luisibanez/debian-med-vista It may help as a starting point for discussion. It will have to be updated to catch up with the final settings of the fis-gtm package. Regarding the VistA vers

Re: Fis-gtm accepted in unstable (Was: Packaging VistA - GT.M directories)

2013-12-15 Thread Yaroslav Halchenko
On Sun, 15 Dec 2013, Andreas Tille wrote: > finally we have a nice Christmas gift for all people dealing with VistA: > fis-gtm is now accepted in unstable. > >...< > Thanks to everybody who has helped to let fis-gtm packages become > available in official Debian hip hip hoorray -- go Team! ;)

Re: Fis-gtm accepted in unstable (Was: Packaging VistA - GT.M directories)

2013-12-15 Thread Luis Ibanez
On Sun, Dec 15, 2013 at 8:20 PM, Yaroslav Halchenko wrote: > > On Sun, 15 Dec 2013, Andreas Tille wrote: > > finally we have a nice Christmas gift for all people dealing with VistA: > > fis-gtm is now accepted in unstable. > > >...< > > Thanks to everybody who has helped to let fis-gtm packages be

Re: Fis-gtm accepted in unstable (Was: Packaging VistA - GT.M directories)

2013-12-15 Thread Bhaskar, K.S
Yaroslav, how could I forget to mention you in my thanks! You drove several hours to our hackathon to help us get GT.M packaged. Regards -- Bhaskar On 12/15/2013 08:20 PM (US Eastern Time), Yaroslav Halchenko wrote: On Sun, 15 Dec 2013, Andreas Tille wrote: finally we have a nice Christmas g

Re: Fis-gtm accepted in unstable (Was: Packaging VistA - GT.M directories)

2013-12-15 Thread Yaroslav Halchenko
On Sun, 15 Dec 2013, Bhaskar, K.S wrote: > Yaroslav, how could I forget to mention you in my thanks! > You drove several hours to our hackathon to help us get GT.M packaged. well -- that was so long ago now it seems, so it is not surprising that those sweet memories about the hackathon were not

Make Colt-lib: DynamicBin1D Thread safe.

2013-12-15 Thread Malavika
Hello, I am using the Debian Colt library version 1.2.0 for some heavy calculations and I see that my system deadlocks randomly. The simplified test case to reproduce the deadlock is given below. The library is claimed to be thread safe but deadlocks are found. import hep.aida.bin.DynamicBin1D;

Bug#732264: ITP: probabel -- Toolset for Genome-Wide Association Analysis

2013-12-15 Thread L.C. Karssen
Package: wnpp Severity: wishlist Owner: "Debian Med team" * Package name: probabel Version : 0.4.1 Upstream Author : L.C. Karssen * URL : http://www.genabel.org/packages/ProbABEL * License : GPL Programming Lang: C, C++, Perl Description : Toolset for

Re: looking for a review for pycorrfit

2013-12-15 Thread Simon Kainz
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Am 2013-12-13 16:40, schrieb Alex Mestiashvili: > Hi All, > > I am looking for a review for my package pycorrfit [0], ITP > #730640. Lintian is clear, but I am pretty sure there are hidden > issues :) > > Also I am not sure what to do with png images

Re: Fis-gtm accepted in unstable

2013-12-15 Thread Andreas Tille
Hi, On Sun, Dec 15, 2013 at 06:41:47PM -0500, Luis Ibanez wrote: > Yes ! now on to VistA. > > https://github.com/luisibanez/debian-med-vista If this is Debian packaging related it might make sense to move it to git://git.debian.org/git/debian-med/vista.git If it might fullfill other pur

Re: Fis-gtm accepted in unstable (Was: Packaging VistA - GT.M directories)

2013-12-15 Thread Andreas Tille
On Sun, Dec 15, 2013 at 08:39:36PM -0500, Luis Ibanez wrote: > It could be the beginning of the conversation. > It has to be updated now, to match the final form of the fis-gtm package, > and to match the latest representation of VistA in the github repository: > > https://github.com/OSEHR

Re: Make Colt-lib: DynamicBin1D Thread safe.

2013-12-15 Thread Andreas Tille
Hi Malavika, thanks for your problem report about the Debian packaged libcolt-java. In general it is advised to use the reportbug tool to issue this kind of bug reports since it submits more detailed information (like for instance the JVM you are using). Moreover in the specific case of colt