Re: ITP: prime-phylo -- Bayesian estimation of gene trees taking the species tree into account

2012-12-06 Thread Andreas Tille
Hi Erik, could you please confirm that you are interested in finding a sponsor for your work? As I said the Debian Med team is really interested. In case you have some time constraints or whatever I'd volunteer to commit your work to our Vcs (please specify whether you prefer Git or SVN) and wil

[MoM] Status (Was: Second round of advise on packaging python-csb)

2012-12-06 Thread Andreas Tille
Hi Tomás, because we started the MoM project here on the Debian Med list I'm quoting the last message about your MoM package (which actually was on the python-modules list) here and wonder whether you could give some status update. It would be great if you would give some succcess / failure / blo

Re: Help with lintian error: bad-distribution-in-changes-file

2012-12-06 Thread Carlos Borroto
On Wed, Dec 5, 2012 at 8:56 PM, Charles Plessy wrote: > Le Wed, Dec 05, 2012 at 08:49:19PM -0500, Carlos Borroto a écrit : >> >> I recently switch my desktop to Debian Testing and now I get this >> error when trying to pack for Ubuntu: >> E: snappy1.0.3-java changes: bad-distribution-in-changes-fi

Re: Help with lintian error: bad-distribution-in-changes-file

2012-12-06 Thread Eric Maeker
Le 6 déc. 2012 à 02:56, Charles Plessy a écrit : > Le Wed, Dec 05, 2012 at 08:49:19PM -0500, Carlos Borroto a écrit : >> >> I recently switch my desktop to Debian Testing and now I get this >> error when trying to pack for Ubuntu: >> E: snappy1.0.3-java changes: bad-distribution-in-changes-file

Re: Help with lintian error: bad-distribution-in-changes-file

2012-12-06 Thread Carlos Borroto
On Thu, Dec 6, 2012 at 11:12 AM, Eric Maeker wrote: > > Le 6 déc. 2012 à 02:56, Charles Plessy a écrit : > >> Le Wed, Dec 05, 2012 at 08:49:19PM -0500, Carlos Borroto a écrit : >>> >>> I recently switch my desktop to Debian Testing and now I get this >>> error when trying to pack for Ubuntu: >>> E

Re: Help with lintian error: bad-distribution-in-changes-file

2012-12-06 Thread Andreas Tille
On Thu, Dec 06, 2012 at 01:54:11PM -0500, Carlos Borroto wrote: > I always like to build > locally first to be sure I'm not uploading broken packages to > LaunchPad. I found it saves tons of time. +1 Kind regards Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med

Re: FastQC read for testing (Was: Some (minimal?) Java help needed)

2012-12-06 Thread Carlos Borroto
On Thu, Nov 8, 2012 at 8:00 AM, Andreas Tille wrote: > > Any volunteer to test the lintian clean package with some real data > before I upload? Steffen? > Hi Andreas, I'm interested in testing fastqc. This is my second time dealing with a debian package in svn and my second miserably fail. Thi

[MoM] Packaging of python-csb - Report #4

2012-12-06 Thread Tomás Di Domenico
Greets, Andreas. Sorry for going silent for so long. So, I've finally been able to get a grasp on both DEP8 testing and the Python3 version. I'm sure there are many new details to fix, but everything seems well underway. The tests are executed correctly, and the Python3 version installs and works

Bug#695311: ITP: python3-csb -- Python framework for structural bioinformatics

2012-12-06 Thread Tomas Di Domenico
Package: wnpp Severity: wishlist Owner: Debian Med group * Package name: python3-csb Version : 1.1.0 Upstream Author : Michael Habeck * URL : http://csb.codeplex.com/ * License : MIT Programming Lang: Python Description : Python framework for structura

Re: FastQC read for testing (Was: Some (minimal?) Java help needed)

2012-12-06 Thread Andreas Tille
Hi Carlos, On Thu, Dec 06, 2012 at 04:16:32PM -0500, Carlos Borroto wrote: > > Any volunteer to test the lintian clean package with some real data > > before I upload? Steffen? > > I'm interested in testing fastqc. This is my second time dealing with > a debian package in svn and my second miser

Re: [MoM] Packaging of python-csb - Report #4

2012-12-06 Thread Andreas Tille
Hi Tomás, On Thu, Dec 06, 2012 at 10:40:43PM +0100, Tomás Di Domenico wrote: > So, I've finally been able to get a grasp on both DEP8 testing and the > Python3 version. I'm sure there are many new details to fix, but > everything seems well underway. The tests are executed correctly, and > the Pyt

Re: FastQC read for testing (Was: Some (minimal?) Java help needed)

2012-12-06 Thread Carlos Borroto
On Thu, Dec 6, 2012 at 5:07 PM, Andreas Tille wrote: > In short: > >1. use uscan from > > http://anonscm.debian.org/gitweb/?p=users/tille/devscripts.git;a=blob;f=scripts/uscan.pl;hb=HEAD > to get the original tarball I used >2. if this fails please send full build log (or mak

Ten Simple Rules for the Open Development of Scientific Software

2012-12-06 Thread Andreas Tille
Hi, feel free to read http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002802 I just sended the authors the following remark via G+: I like your ten simple rules. What I'm missing in rule 7 and/or 8 is the idea that you should try to get your software included into

Re: FastQC read for testing (Was: Some (minimal?) Java help needed)

2012-12-06 Thread Andreas Tille
[Steffen: Please read last paragraph about moving fastqc from SVN to Git] Hi Carlos, On Thu, Dec 06, 2012 at 06:59:35PM -0500, Carlos Borroto wrote: > On Thu, Dec 6, 2012 at 5:07 PM, Andreas Tille wrote: > > In short: > > > >1. use uscan from > > > > http://anonscm.debian.org/gitweb/