Hi Michael,
thanks for your effort to prepare a bamtools Debian package and also
notifying the Debian Med project.
On Tue, Nov 06, 2012 at 03:16:44PM -0700, Michael Crusoe wrote:
> And here's the package,
>
> https://github.com/mr-c/bamtools/tree/debian
I tried to check out this URL using
g
Hi,
We released a new stable upstream today: v0.8.0. The packaging is updated in
the debian med svn.
Can you sponsor this update?
Thanks
Eric, freemedforms.com
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Hi Eric,
thanks for your preparation.
On Wed, Nov 07, 2012 at 01:40:10PM +0100, Eric Maeker wrote:
> We released a new stable upstream today: v0.8.0. The packaging is updated in
> the debian med svn.
> Can you sponsor this update?
Yes, I'll have a look. Please note that I'll upload to experime
It is also possible to remove the third party code from the source tarball
and from debian/copyright.
Please take a look at the following two patches. They add out-of-source
support to bamtools.
https://github.com/domibel/bamtools/commit/5fc8c1928eaa46fb58618db8ecb93e40cfce54ba
https://github.com
Hi,
I stumbled upon this one and did some work on it in
Vcs-Svn:
http://svn.debian.org/debian-med/trunk/packages/babraham/fastqc/trunk/
It is close to lintian clean now but there is some CLASSPATH issue
which is probably very easy for Java experts:
$ fastqc
Exception in thread "main" java.
Hello,
I'm writing you on behalf of the Debian Med team that tries to package
all Free Software relevant to medical care and bioinformatics straight
into official Debian. We've got a hint to your PHYLOViZ package and it
seems to be a nice target for us. When inspecting your download page[1]
I ju
Hi,
On Wed, Nov 07, 2012 at 01:27:50PM -0700, Michael Crusoe wrote:
> > Debian packaging at git.debian.org as it is described in Debian Med team
> > policy[1] which has a lot of advantages that might not obvious at first
> > sight (I'd happily elaborate on this if you are curious what these might
Le Wed, Nov 07, 2012 at 09:52:05PM +0100, Andreas Tille a écrit :
> Hi,
>
> On Wed, Nov 07, 2012 at 01:27:50PM -0700, Michael Crusoe wrote:
> > > Debian packaging at git.debian.org as it is described in Debian Med team
> > > policy[1] which has a lot of advantages that might not obvious at first
>
Hi Andreas !
The github URL provided by Michael Crusoe
is not the git repository.
The actual git repository is
git://github.com/mr-c/bamtools.git
On 11/07/2012 02:59 AM, Andreas Tille wrote:
Hi Michael,
thanks for your effort to prepare a bamtools Debian package and also
notifying the D
On Wed, Nov 7, 2012 at 1:52 PM, Andreas Tille wrote:
> Hi,
>
> On Wed, Nov 07, 2012 at 01:27:50PM -0700, Michael Crusoe wrote:
>> > Debian packaging at git.debian.org as it is described in Debian Med team
>> > policy[1] which has a lot of advantages that might not obvious at first
>> > sight (I'd
On Wed, Nov 7, 2012 at 6:21 AM, Dominique Belhachemi wrote:
> It is also possible to remove the third party code from the source tarball
> and from debian/copyright.
I've removed it from the master branch and modified the copyright.
What is the best way to update the source tarball?
> Please tak
On Wed, Nov 07, 2012 at 08:59:27PM -0700, Michael Crusoe wrote:
> On Wed, Nov 7, 2012 at 6:21 AM, Dominique Belhachemi
> wrote:
> > It is also possible to remove the third party code from the source tarball
> > and from debian/copyright.
>
> I've removed it from the master branch and modified th
Le 11/7/12 3:29 PM, Andreas Tille a écrit :
> Hi,
>
> I stumbled upon this one and did some work on it in
>
>Vcs-Svn:
> http://svn.debian.org/debian-med/trunk/packages/babraham/fastqc/trunk/
>
> It is close to lintian clean now but there is some CLASSPATH issue
> which is probably very easy f
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