Hi, I stumbled upon this one and did some work on it in
Vcs-Svn: http://svn.debian.org/debian-med/trunk/packages/babraham/fastqc/trunk/ It is close to lintian clean now but there is some CLASSPATH issue which is probably very easy for Java experts: $ fastqc Exception in thread "main" java.lang.NoClassDefFoundError: uk/ac/babraham/FastQC/FastQCApplication Caused by: java.lang.ClassNotFoundException: uk.ac.babraham.FastQC.FastQCApplication at java.net.URLClassLoader$1.run(URLClassLoader.java:217) at java.security.AccessController.doPrivileged(Native Method) at java.net.URLClassLoader.findClass(URLClassLoader.java:205) at java.lang.ClassLoader.loadClass(ClassLoader.java:321) at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:294) at java.lang.ClassLoader.loadClass(ClassLoader.java:266) Could not find the main class: uk.ac.babraham.FastQC.FastQCApplication. Program will exit. or when trying manually what the wrapper tries to do $ java -jar /usr/share/fastqc/fastqc.jar uk.ac.babraham.FastQC.FastQCApplication Skipping 'uk.ac.babraham.FastQC.FastQCApplication' which didn't exist, or couldn't be read My suspicion is that simply specifying the Main-Class in debian/manifest is not sufficient. Something might be wrong with the Debian home brewn Makefile as quilt patch and ant+built.xml might do a better job to build the Jar functionally. Any hint for doing this properly? Note to obtain the source as easy as possible: Just use the uscan from http://anonscm.debian.org/gitweb/?p=users/tille/devscripts.git;a=blob;f=scripts/uscan.pl to call uscan.pl --verbose --force-download --repack-compression xz which gives you a properly stripped source tarball. Kind regards and thanks for any help Andreas. On Wed, Apr 25, 2012 at 01:08:54AM +0200, Steffen Moeller wrote: > Package: wnpp > Severity: wishlist > Owner: Steffen Moeller <steffen_moel...@gmx.de> > > * Package name : fastqc > * URL : http://www.bioinformatics.babraham.ac.uk/projects/fastqc/ > * License : GPL-3 > Programming Lang: Java > Description : quality control for next generation sequencing data > > The Debian Med source code repository has some functional (not lintian clean) > package in > trunk/packages/babraham/fastqc. > -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20121107142932.gb25...@an3as.eu
