This also seems to work: `-mpc64`
On Mon, Jul 11, 2022 at 10:16 PM Nilesh Patra
wrote:
> On 7/11/22 6:14 PM, Frith, Martin wrote:
> > Hi Nilesh,
> >
> > after some searching and experimentation, I think `-ffloat-store`
> doesn't always solve this floating point issue.
> > But this seems to solv
On 7/11/22 6:14 PM, Frith, Martin wrote:
Hi Nilesh,
after some searching and experimentation, I think `-ffloat-store` doesn't
always solve this floating point issue.
But this seems to solve it: `-msse2 -mfpmath=sse`.
Unfortunately I can't use these as it would violate i386 baseline that debia
Hi Nilesh,
after some searching and experimentation, I think `-ffloat-store` doesn't
always solve this floating point issue.
But this seems to solve it: `-msse2 -mfpmath=sse`.
https://gcc.gnu.org/onlinedocs/gcc/x86-Options.html
https://gcc.gnu.org/onlinedocs/gcc/Optimize-Options.html
I hope that
Hi Martin and Katoh,
On Mon, Jul 11, 2022 at 06:40:51PM +0900, Frith, Martin wrote:
> Dear Nilesh and Debian Med
> (cc MAFFT author Katohさん)
>
> I have partly tracked down this lamassemble issue. First, I tested
> lamassemble on x86_64: the tests passed as expected. Then, I recompiled
> MAFFT aft
Dear Nilesh and Debian Med
(cc MAFFT author Katohさん)
I have partly tracked down this lamassemble issue. First, I tested
lamassemble on x86_64: the tests passed as expected. Then, I recompiled
MAFFT after adding "-m32" to CFLAGS, which compiled it in 32-bit mode. Now,
the tests in
lamassemble/tests
Sorry I lack experience with this, so I have some questions...
Were the tests passing before? Was there a specific update after which they
failed?
And they're still passing except on i386?
Have a nice day,
Martin
On Mon, Jul 11, 2022 at 3:53 PM Nilesh Patra wrote:
> On Mon, Jul 11, 2022 at 03:
On 7/11/22 12:26 PM, Frith, Martin wrote:
Sorry I lack experience with this, so I have some questions...
No prob.
Were the tests passing before? Was there a specific update after which they
failed?
They were always failing on version 1.4.2 which is the only version I had every
uploaded.
Do any of lamassemble's dependencies (e.g. mafft) fail tests?
On Mon, Jul 11, 2022 at 3:36 PM Nilesh Patra wrote:
> Hi again,
>
> On Sun, May 29, 2022 at 10:10:14PM +0900, Frith, Martin wrote:
> > Wow, amazingly fast!!!
>
> lamassemble fails its tests on i386 (see here[1]) -- could you fix
> ac
On Mon, Jul 11, 2022 at 03:41:41PM +0900, Frith, Martin wrote:
> Do any of lamassemble's dependencies (e.g. mafft) fail tests?
No.
Neither mafft, nor last-align, links here[1,2]
[1]: https://ci.debian.net/packages/m/mafft/unstable/i386/
[2]: https://ci.debian.net/packages/l/last-align/unstable/i3
Hi again,
On Sun, May 29, 2022 at 10:10:14PM +0900, Frith, Martin wrote:
> Wow, amazingly fast!!!
lamassemble fails its tests on i386 (see here[1]) -- could you fix accordingly?
[1]:
https://ci.debian.net/data/autopkgtest/testing/i386/l/lamassemble/22546451/log.gz
--
Best,
Nilesh
signature.
Am Sun, May 29, 2022 at 10:10:14PM +0900 schrieb Frith, Martin:
> Wow, amazingly fast!!!
Yep, thanks to Nilesh for working on this (while I was relaxing
in the wood ;-) )
Kind regards and I hope its inspiring to do more suggestions if these
are dealt with very quickly
Andreas.
--
http://f
Wow, amazingly fast!!!
On Sun, May 29, 2022 at 7:40 PM Nilesh Patra wrote:
> Hi Martin,
>
> On Sun, May 29, 2022 at 04:41:41PM +0900, Frith, Martin wrote:
> > I hope it's ok for me to suggest packaging some of my software
>
> That is very welcome. We also have LAST in our archive which you
> au
Hi Martin,
On Sun, May 29, 2022 at 04:41:41PM +0900, Frith, Martin wrote:
> I hope it's ok for me to suggest packaging some of my software
That is very welcome. We also have LAST in our archive which you
authored.
> https://github.com/mcfrith/dnarrange
> https://gitlab.com/mcfrith/lamassemble
I
Dear Debian Med,
I hope it's ok for me to suggest packaging some of my software:
https://github.com/mcfrith/dnarrange
https://gitlab.com/mcfrith/lamassemble
dnarrange has actually been used for health care, e.g. here:
https://pubmed.ncbi.nlm.nih.gov/33510365/
https://pubmed.ncbi.nlm.nih.gov/32731
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