Re: python-biopython test failure with libcifpp changes (Bug #1086156)

2024-10-31 Thread Étienne Mollier
Hi Maarten, Maarten L. Hekkelman, on 2024-10-31: > Op 30-10-2024 om 20:42 schreef Étienne Mollier: > > despite the incomplete subset, it allows the > > test to pass, allowing the python-biopython build to go through. > > I should be able to upload a fix shortly. 🙂 > If you bundle your own mini-cc

Re: python-biopython test failure with libcifpp changes (Bug #1086156)

2024-10-31 Thread Maarten L. Hekkelman
Hi Étienne, Op 30-10-2024 om 20:42 schreef Étienne Mollier: despite the incomplete subset, it allows the test to pass, allowing the python-biopython build to go through. I should be able to upload a fix shortly. 🙂 If you bundle your own mini-ccd file, you could fix the warning by copying the S

Re: python-biopython test failure with libcifpp changes (Bug #1086156)

2024-10-30 Thread Étienne Mollier
Hi Maarten, Hi Andrius, I've been in the vicinity for a couple of years now, and yet neither biology nor chemistry are my field, far from it. Thank you for helping me connecting the dots with this issue! :) Maarten L. Hekkelman, on 2024-10-30: > Of course, it would be easiest to include the com

Re: python-biopython test failure with libcifpp changes (Bug #1086156)

2024-10-30 Thread Andrius Merkys
Hi, On 10/29/24 23:29, Étienne Mollier wrote: I was wondering whether the 422M dataset components.cif wouldn't be worth injecting into the libcifpp-data package, to facilitate the handling of data by end users? Maarten and I have discussed the prospect of packaging components.cif before [1],

Re: python-biopython test failure with libcifpp changes (Bug #1086156)

2024-10-29 Thread Maarten L. Hekkelman
Hi Étienne, Of course, it would be easiest to include the components.cif file in libcifpp. However, this file changes weekly and it is huge. Two good reasons not to do it. What I did for density-fitness e.g. is include a subset of components.cif large enough for testing. That way, you can av

python-biopython test failure with libcifpp changes (Bug #1086156)

2024-10-29 Thread Étienne Mollier
Hi Maarten, I'm dealing with python-biopython release critical bug #1086156, and I was wondering whether the 422M dataset components.cif wouldn't be worth injecting into the libcifpp-data package, to facilitate the handling of data by end users? I guess that sure would make the package rather lar