Re: Bug#814000: ITP: cwltool -- Common workflow language reference implementation

2016-04-20 Thread Afif Elghraoui
على الأربعاء 20 نيسـان 2016 ‫06:14، كتب Yaroslav Halchenko: >>> With the current setup, it seems like the answer should be to create >>> > > another metapackage for workflow management systems. Of the entries >>> > > currently in science-tools, at least pegasus-wms, snakemake, and cwltool >>> > >

Re: Bug#814000: ITP: cwltool -- Common workflow language reference implementation

2016-04-20 Thread Yaroslav Halchenko
On Wed, 20 Apr 2016, Andreas Tille wrote: > Hi Afif, > On Tue, Apr 19, 2016 at 10:12:40PM -0700, Afif Elghraoui wrote: > > > and the reason is given in the description of the task: > > >Note that there is no according metapackage created since the packages > > >might be to different to

Re: Bug#814000: ITP: cwltool -- Common workflow language reference implementation

2016-04-19 Thread Andreas Tille
Hi Afif, On Tue, Apr 19, 2016 at 10:12:40PM -0700, Afif Elghraoui wrote: > > and the reason is given in the description of the task: > > > >Note that there is no according metapackage created since the packages > >might be to different to make sense to install all on one machine. > > > >

Re: Bug#814000: ITP: cwltool -- Common workflow language reference implementation

2016-04-19 Thread Afif Elghraoui
Hi, Andreas, على الثلاثاء 19 نيسـان 2016 ‫02:20، كتب Andreas Tille: > > I'd like to come back to this plan: > > On Fri, Mar 18, 2016 at 12:21:47AM -0700, Afif Elghraoui wrote: >>> However, even if we have discussed this before the situation is that if >>> we recommend biologists to install med-b

Re: Bug#814000: ITP: cwltool -- Common workflow language reference implementation

2016-04-19 Thread Andreas Tille
Hi Afif, I'd like to come back to this plan: On Fri, Mar 18, 2016 at 12:21:47AM -0700, Afif Elghraoui wrote: > > However, even if we have discussed this before the situation is that if > > we recommend biologists to install med-bio and med-bio-dev they end up > > with an installation without cwlt

Re: Bug#814000: ITP: cwltool -- Common workflow language reference implementation

2016-03-19 Thread Afif Elghraoui
Hello, على الجمعـة 18 آذار 2016 ‫00:04، كتب Andreas Tille: > Hi, > > On Thu, Mar 17, 2016 at 09:37:59PM -0700, Afif Elghraoui wrote: >> This question came up before and we agreed that it should go to >> science-tools. > > Ahhh, that's simply me to forget things. ;-) > Haha, I felt some déjà vu

Re: Bug#814000: ITP: cwltool -- Common workflow language reference implementation

2016-03-19 Thread Andreas Tille
Hi, On Thu, Mar 17, 2016 at 09:37:59PM -0700, Afif Elghraoui wrote: > > > > this package is not yet mentioned on our tasks pages (in general it is a > > good idea to add the package name to the tasks files immediately after > > the first commit to VCS). I'm hesitating whether this belongs to bio

Re: Bug#814000: ITP: cwltool -- Common workflow language reference implementation

2016-03-19 Thread Andreas Tille
On Fri, Mar 18, 2016 at 12:21:47AM -0700, Afif Elghraoui wrote: > commit 3a292dd808096216a76f93d1faa8e0e49d7f5a84 > Author: Andreas Tille > Date: Wed Feb 17 11:29:38 2016 +0100 Hey, this was all before I did this: http://fam-tille.de/island2016/ So, yes, I had a real vacation and were full

Re: Bug#814000: ITP: cwltool -- Common workflow language reference implementation

2016-03-19 Thread Afif Elghraoui
على الجمعـة 18 آذار 2016 ‫01:42، كتب Andreas Tille: > On Fri, Mar 18, 2016 at 12:21:47AM -0700, Afif Elghraoui wrote: >> commit 3a292dd808096216a76f93d1faa8e0e49d7f5a84 >> Author: Andreas Tille >> Date: Wed Feb 17 11:29:38 2016 +0100 > > Hey, this was all before I did this: > >http://fam

Re: Bug#814000: ITP: cwltool -- Common workflow language reference implementation

2016-03-19 Thread Andreas Tille
Hi Michael, this package is not yet mentioned on our tasks pages (in general it is a good idea to add the package name to the tasks files immediately after the first commit to VCS). I'm hesitating whether this belongs to bio or bio-dev. Would you mind taking over the inclusion or would you like

Re: Bug#814000: ITP: cwltool -- Common workflow language reference implementation

2016-03-19 Thread Afif Elghraoui
Hi, Andreas, على الخميس 17 آذار 2016 ‫09:52، كتب Andreas Tille: > > this package is not yet mentioned on our tasks pages (in general it is a > good idea to add the package name to the tasks files immediately after > the first commit to VCS). I'm hesitating whether this belongs to bio or > bio-de

Bug#814000: ITP: cwltool -- Common workflow language reference implementation

2016-02-07 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: cwltool Version : 1.0.20160203221531 Upstream Author : Common Workflow Language working group * URL : http://www.commonwl.org * License : Apache-2.0 Programming Lang: Python Descripti