Autopkgtests for bamkit and ea-utils

Hello! I have written autopkgtests for bamkit[1] and ea-utils[2]. Kindly review, Thank you! Regards, Shruti [1] https://salsa.debian.org/med-team/bamkit [2] https://salsa.debian.org/med-team/ea-utils ᐧ

Autopkgtest for skewer

Hello! I have added autopkgtests for skewer[1]. Kindly review, Thank you! Regards, Shruti [1] https://salsa.debian.org/med-team/skewer ᐧ

Autopkgtest for perm

Hello! I have written autopkgtests for perm[1] The package initially failed blhc in the pipeline but when I fixed the error [2] the autopkgtest which was initially working fails [3]. I'm not sure why the test seems to fail, could you please have a look and let me know how I can proceed? Thank yo

Re: Autopkgtest for Segemehl

> > > >From my discussions on reproducible builds mailing list, it needs to be > fixed at compiler level, and there might not be much we can do here. > So I'd suggest disabling reprotest for this package simply. > Thank you! I have disabled reprotest and pushed. > Look at the logol package to se

Autopkgtest for Segemehl

Hello! I have written autopkgtests for segemehl[1]. The package was failing blhc and reprotrest in the pipeline. I managed to fix the blhc error but I am a little stuck on how to begin fixing reprotest[2]. Kindly review and let me know how I can proceed, Thank you! Regards, Shruti [1] https://s

Re: Autopkgtest for Estscan and Blasr

> > > > Hello! > > > > I have written autopkgtests for estscan[1] and blasr[2]. > > > > Blasr seems to fail build in the ci pipeline[3]. > > Could you please review and take a look and let me know how to proceed? > > estscan looks good. > > For blasr, > > 1) Copyright is incomplete, you also need t

Autopkgtest for Estscan and Blasr

Hello! I have written autopkgtests for estscan[1] and blasr[2]. Blasr seems to fail build in the ci pipeline[3]. Could you please review and take a look and let me know how to proceed? Thank you! Regards Shruti [1] https://salsa.debian.org/med-team/estscan [2] https://salsa.debian.org/med-team/

Autopkgtest for Ecopcr and Python-gtfparse

Hello! I have written autopkgtests for ecopcr[1] and python-gtfparse[2]. Kindly review, Thank you! Regards, Shruti [1] https://salsa.debian.org/med-team/ecopcr [2] https://salsa.debian.org/med-team/python-gtfparse ᐧ

Re: Autopkgtest for Yanagiba and unc-fish

> > > > Hello! > > > > I have written autopkgtests for yanagiba[1] and unc-fish[2]. > > > > The yanagiba package seems to fail the ci pipeline. The error seems to be > > from - > > > > dpkg: yanagiba-build-deps: dependency problems, but configuring anyway as > > you requested: > > yanagiba-build-d

Autopkgtest for Yanagiba and unc-fish

Hello! I have written autopkgtests for yanagiba[1] and unc-fish[2]. The yanagiba package seems to fail the ci pipeline. The error seems to be from - dpkg: yanagiba-build-deps: dependency problems, but configuring anyway as you requested: yanagiba-build-deps depends on dh-python; however: Pack

Autopkgtest for Spaced

Hello! I have written autopkgtests for spaced [1]. Kindly review, Thank you! Shruti [1] https://salsa.debian.org/med-team/spaced ᐧ

Autopkgtest for Logol

Hello! I am working on writing autopkgtests for logol [1] and the test passes in my chroot but fails the pipeline along with blhc and reprotest. I tried fixing blhc like we did earlier with the Makefile patch but I don’t know where to begin in this kind of package. Could you point me in the righ

Autopkgtest for samblaster and paraclu

Hello! I have written autopkgtests for samblaster [1] and paraclu [2]. For samblaster, the blhc fails during the ci pipeline. I tried fixing it by adding CPPFLAGS similar to what was done in this commit [3], but it did not seem to work. Kindly let me know how I can rectify this. For paraclu, I g

Autopkgtest Review

Hello! I have written autopkgtests for seirsplus, salmid and mirtop. For mirtop, the tests pass for me in my chroot but seem to fail the pipeline [4]. Could you please take a look and let me know how I can proceed? Kindly review, Thank you! Shruti [1] https://salsa.debian.org/med-team/seirsplus

Re: Autopkgtests for pilercr

I had originally taken the data from the examples on the website [1] and I thought that the same data would be available on their github repository. But since the data is not the same, I have now changed it to the same sequence from the NCBI database [2] so I have added the public domain license f

Re: Autopkgtests for pilercr

Hi, The fasta files that I used are present as their examples. It can also be found on their repository here - ( https://github.com/dcouvin/CRISPRCasFinder/blob/master/install_test/sequence.fasta ) I modified this file a little for the test. Is this alright or do I change the dataset that I used?

Autopkgtests for pilercr

Hi, I have written autopkgtests for pilercr ( https://salsa.debian.org/med-team/pilercr) Kindly review, Thanks! Regards Shruti ᐧ

Autopkgtests for Gramalign

Hi, I have written autopkgtests for gramalign ( https://salsa.debian.org/med-team/gramalign) Kindly review, Regards Shruti

Autopkgtests for python - leidenalg

Hi, I have written autopkgtests for python-leidenalg ( https://salsa.debian.org/med-team/python-leidenalg) Kindly review, Regards Shruti ᐧ

Autopkgtests for yaha

Hi, I have written autopkgtests for yaha (https://salsa.debian.org/med-team/yaha ) Kindly review, Regards Shruti ᐧ

Re: Autopkgtests for quorum

Hi, I have converted the .bam test data to .sam files, added the source of the files to d/tests/README and d/copyright and pushed. Kindly review. Thank you! Regards, Shruti ᐧ

Re: Autopkgtests for quorum

Hi, I have taken the examples from filtlong and pushed the changes for quorum ( https://salsa.debian.org/med-team/quorum) I have also added autopkgtests for Nanosv ( https://salsa.debian.org/med-team/nanosv) Kindly review, Thanks! Shruti ᐧ

Autopkgtests for quorum

Hi, I have written autopkgtests for quorum ( https://salsa.debian.org/med-team/quorum) Kindly review, Regards Shruti ᐧ

RFS Prime-phylo

Hi, I have added autopkgtests for prime-phylo. ( https://salsa.debian.org/med-team/prime-phylo) Kindly review and sponsor Regards, Shruti ᐧ

Re: Welcome Shruti Sridhar to the GSoC project

Thank you so much! I am really excited and look forward to working with the team! Thank you once again! Regards, Shruti Sridhar

Introduction

Hello! My name is Shruti Sridhar and I’m currently a senior at BITS Pilani Goa, India studying Biological Sciences and Chemical Engineering. I am reaching out in regards to the Debian Med project in this year’s Google Summer of Code for Quality Assurance and Continuous Integration for

Re: Outreachy project: complete workflows of tools

Hi, My name is Shruti. I have been contributing to Debian Med by writing autopkgtests for which I will be applying through GSoC this year. However, I came across this project which really interests me. I was initially planning on applying for this through Outreachy but unfortunately my application

Re: Autopkgtest for Changeo

I have embedded the data and changed the autopkgtest. Kindly review. Thanking you, Regards Shruti ᐧ

Autopkgtest for Changeo

Hi, I have added autopkgtests for Changeo. Please review. 1. https://salsa.debian.org/med-team/changeo Best, Shruti ᐧ

Re: Help with autopkgtest for Seqsero and python-loompy

Hi, Thank you so much! I haven't had a chance to work on loompy yet, but I have added tests to Seqsero. Please review and sponsor. Best, Shruti On Wed, Feb 24, 2021 at 2:33 PM Andreas Tille wrote: > On Wed, Feb 24, 2021 at 02:00:19PM +0530, Nilesh Patra wrote: > > Protecting the master branc

Help with autopkgtest for Seqsero and python-loompy

Hi, I was trying to write autopkgtests for Seqsero and python-loompy. I have been facing some errors. Could someone please have a look and let me know what I can do : 1. Seqsero : I added the test data and the path to that in the example file but on run

RFS: patman

Hi, I have added autopkgtests for patman. ( https://salsa.debian.org/med-team/patman) Kindly review and sponsor Regards, Shruti

RFS: damapper and dascrubber

Hi, I've added autopkgtests to damapper and dascrubber. Please review and sponsor. 1. https://salsa.debian.org/med-team/damapper 2. https://salsa.debian.org/med-team/dascrubber Best, Shruti

Re: RFS : daligner

Tille wrote: > Hi Shruti, > > On Wed, Aug 12, 2020 at 08:30:37PM +0530, Shruti Sridhar wrote: > > My name is Shruti. I am currently studying Biological Sciences and > Chemical > > Engineering in India. I would love to contribute to Debian Med. > > Thanks a lot for

RFS : daligner

Hello! My name is Shruti. I am currently studying Biological Sciences and Chemical Engineering in India. I would love to contribute to Debian Med. I have added autopkgtests for daligner. Kindly review and let me know if I have to make any changes. Best, Shruti Sridhar