Hi, Andreas. ABySS 2.0.1 is now GPL-3 without the non-commercial
restriction!
https://github.com/bcgsc/abyss/releases
Cheers,
Shaun
--
http://sjackman.ca
On September 6, 2016 at 09:13:44, Andreas Tille (andr...@an3as.eu) wrote:
Hi Shaun,
On Tue, Sep 06, 2016 at 03:49:16PM +, Shaun
the
e-mail, and we'll see how it goes.
Cheers,
Shaun
On Tue, 6 Sep 2016 at 08:34 Andreas Tille wrote:
> Hi Shaun,
>
> On Mon, Sep 05, 2016 at 01:50:57PM -0700, Shaun Jackman wrote:
> > The license of ABySS 2.0 is unchanged from ABySS 1.9. The license of
> ABySS
> > a
/btl_bloomfilter do not apply to
https://github.com/bcgsc/abyss
<https://github.com/bcgsc/abyss/blob/master/COPYRIGHT>
Cheers,
Shaun
--
Shaun Jackman
http://sjackman.ca
On September 5, 2016 at 12:17:04, Michael Crusoe (michael.cru...@gmail.com)
wrote:
I haven't contacted anyone except these
No worries, Andreas. It's just a coding style suggestion. Your
solution is perfectly fine.
Cheers,
Shaun
On 23 April 2012 11:48, Andreas Tille wrote:
> Hi Shaun,
>
> On Mon, Apr 23, 2012 at 08:43:22AM -0700, Shaun Jackman wrote:
>>
>> I'd suggest using a scoped fo
Hi Andreas,
I'd suggest using a scoped for loop rather than the original while loop.
Cheers,
Shaun
On 2012-04-23, at 1:30 AM, Andreas Tille wrote:
> Hi Shaun,
>
> as you know the Debian Med team has packaged plink for Debian. Recently
> we received a bug report that the package does not build
t;
> On Sun, Apr 01, 2012 at 10:42:31AM -0700, Shaun Jackman wrote:
>> Currently ABySS is maintained by me personally, not by Debian-med.
>
> Yes, that's what I noticed and I wanted to provide some enhancements to
> the package.
>
>> Are you proposing ad
Hi Andreas,
Currently ABySS is maintained by me personally, not by Debian-med. Are you
proposing adopting the package?
Cheers,
Shaun
On 2012-03-31, at 23:20, Andreas Tille wrote:
> Hi Shaun,
>
> when checking the citations of our packages I stumbled upon abyss which
> is not yet in the Debia
Hi Andreas,
I haven't looked at your changes yet, but I trust your judgement. Go ahead and
upload. Thanks for your effort.
Cheers,
Shaun
On 2012-03-31, at 0:04, Andreas Tille wrote:
> Hi Shaun,
>
> you might have noticed that I updated jellyfish in Git. My main
> motivation was to move the
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
Hi,
I'm the upstream and Debian maintainer of abyss, which
is a bioinformatics software package. Its license is free for academic
use and licensed to commercial users. The license currently reads
Debian may redistribute this software package.
Is that
On 26 July 2011 10:02, Shaun Jackman wrote:
> On 25 July 2011 17:13, Charles Plessy wrote:
>> Le Mon, Jul 25, 2011 at 05:03:55PM -0700, Shaun Jackman a écrit :
>>>
>>> I used git-import-orig from git-buildpackage 0.5.26, but it didn't
>>> update the pris
On 25 July 2011 17:13, Charles Plessy wrote:
> Le Mon, Jul 25, 2011 at 05:03:55PM -0700, Shaun Jackman a écrit :
>>
>> I used git-import-orig from git-buildpackage 0.5.26, but it didn't
>> update the pristine-tar branch by default. I'll read the man page
>
On 25 July 2011 16:12, Charles Plessy wrote:
> Le Mon, Jul 25, 2011 at 12:56:01PM -0700, Shaun Jackman a écrit :
>> Hi Charles,
>>
>> I've just uploaded IGV 2.0.6-1.
>>
>> What do I do with the pristine-tar and meta branches? These branches
>> are n
Hi Charles,
I've just uploaded IGV 2.0.6-1.
What do I do with the pristine-tar and meta branches? These branches
are new to me.
Cheers,
Shaun
On 28 June 2011 10:38, Shaun Jackman wrote:
> Hi Charles,
>
> I'm going to be pretty busy for about two weeks. I probably won&#x
Hi all,
I work with the author of Circos and am a Debian developer. I'm happy
to help if you need a contact inside.
Cheers,
Shaun
On 21 July 2011 22:33, Olivier Sallou wrote:
> Hi,
> I have contacted upstream author, and he will remove copyright issues on
> fonts in next version (that should co
Hi Charles,
I'm going to be pretty busy for about two weeks. I probably won't have
time to look into this until then. If 1.5.65 compiles cleanly and
works, there's no harm in uploading that in the mean time. I can take
a look into the 2.0 log4j issue two weeks from now. The
RollingFileAppender cla
again, they won't repackage it from scratch?
Cheers,
Shaun
On 29 July 2010 01:20, Charles Plessy wrote:
> Le Wed, Jul 28, 2010 at 11:31:51PM +0000, Shaun Jackman a écrit :
>
>> + * Remove libcolt-java from the dependencies.
>
> Hi Shaun,
>
> if you have sometimes f
Hi,
I'm a git newbie, and I stumbled around a bit before I found this git
configuration gem:
git config branch.master.remote origin
git config branch.master.merge refs/heads/master
Could these please be added to the git section of the policy:
http://debian-med.alioth.debian.org/docs/policy.html#i
On 12 May 2010 16:26, Charles Plessy wrote:
> Le Wed, May 12, 2010 at 11:14:40AM -0700, Shaun Jackman a écrit :
>> On 11 May 2010 22:01, Charles Plessy wrote:
>> ...
>> > Please consider adding a ‘pristine-tar’ branch if it is easy for you.
>> > http://wiki.deb
Hi Charles,
On 11 May 2010 22:01, Charles Plessy wrote:
...
> Please consider adding a ‘pristine-tar’ branch if it is easy for you.
> http://wiki.debian.org/PackagingWithGit#pristine-tar
Since the pristine tar can be downloaded from either the upstream site
or from ftp.debian.org, it seems redun
On 11 May 2010 11:37, Shaun Jackman wrote:
> On 10 May 2010 23:32, Andreas Tille wrote:
>> On Mon, May 10, 2010 at 05:31:12PM -0700, Shaun Jackman wrote:
...
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On 10 May 2010 23:32, Andreas Tille wrote:
> On Mon, May 10, 2010 at 05:31:12PM -0700, Shaun Jackman wrote:
>> > Since this license is not compatible with
>> > the GPL, I recommend that you chose another license for your packaging
>> > work, in
>> >
Hi Charles,
On 4 May 2010 21:01, Charles Plessy wrote:
> Le Tue, May 04, 2010 at 06:30:26PM -0700, Shaun Jackman a écrit :
>>
>> I've packaged GMAP:
>> Align mRNA and EST sequences to a genome
>> GMAP: Genomic Mapping and Alignment Program
>> GSNAP: G
Hi,
I've packaged GMAP:
Align mRNA and EST sequences to a genome
GMAP: Genomic Mapping and Alignment Program
GSNAP: Genomic Short-read Nucleotide Alignment Program
The ITP is here:
http://bugs.debian.org/580277
The git repository is here:
git://git.debian.org/git/debian-med/gmap.git
http://git
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