Hi,
On Sun, Jan 10, 2016 at 1:57 PM, Andreas Tille wrote:
> On Sun, Jan 10, 2016 at 01:48:58PM +0100, Michael Hanke wrote:
> >
> > I am building it right now. As for giving you upload permissions, I'd
> > support this -- but I have to look up the procedure. Plea
bug. I will close this manually
> once this upload is done.
>
> - #789931 relates to arm64 and ITK4 is not available there
> (hence I will mark this wontfix and downgrade it to normal)
>
> Many thanks,
> Gert
>
>
>
>
>
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Hi,
> > I also want to add octave/matlab/python scripts. But I am not
> > sure where to put them. I would be nice if there was a way to
> > add them to the default search path for octave/matlab, for
> > example.
>
> You could add these in additional python-bart octave-bart binary
> packages (sorry
Hi,
On Tue, Jul 16, 2013 at 9:04 AM, Andreas Tille wrote:
> Hi,
>
> I remember that I had a hard time when I updated ctn the last time which
> was five years ago. Upstream did not even issued a new version since
> ten years. So I wonder what you might think about ctn: Should I simply
> updat
On Thu, Jul 19, 2012 at 04:15:35PM +0200, Andreas Tille wrote:
> On Thu, Jul 19, 2012 at 02:34:02PM +0200, Michael Hanke wrote:
> > On Wed, Jul 18, 2012 at 09:04:34AM +0200, Andreas Tille wrote:
> > > I was wondering whether the user base for these different kinds of
> > &
orward to a have debtags(-like)
scheme to assemble tasks from packages, where any package can be
assigned to any task, simply by adding the corresponding tag.
In this scenario, there seems to be very little cost of having
arbitrarily fine-grained tasks (and any number of them).
Michael
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On Tue, May 29, 2012 at 08:00:57AM +0200, Andreas Tille wrote:
> http://www.nature.com/nature/journal/v482/n7386/full/nature10836.html
In case you don't want to pay Nature to read about this, you can
alternatively pay Science...
http://www.sciencemag.org/content/336/6078/159
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Micha
backup would certainly help to make everyones life
much easier.
Kudos to Steve and Mathieu for all their effort to make this available
in Debian.
Michael
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?
AFAIK the only problem is lack of time for all involved parties. If you
can afford to spend some of yours, I'm pretty sure everybody would be
happy. I'm CC'ing Thiago, maybe he knows more.
Thanks,
Michael
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in this case master.
The debian packaging is in the 'debian' branch (see below for reason).
To get there:
git checkout -b debian origin/debian
> On Thu, Mar 17, 2011 at 09:54:04AM -0400, Michael Hanke wrote:
> >
> > Upstream has sigar on github. It felt good to stay close to u
s I might have a look.
Feel free to move it. For a quick look:
git clone git://github.com/hanke/sigar.git
Michael
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Forgot this one:
On Thu, Mar 17, 2011 at 02:30:53PM +0100, Andreas Tille wrote:
> > But the other problems I
> > haven't seen yet. Michael Hanke created a branch in github to do the
> > sigar packaging (https://github.com/hanke/sigar/tree/debian) and I
> > forked that
o move these things foreward.
I think the issue here is lack of time, all those things are trivial to
fix -- just nobody has gotten to it yet.
Michael
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On Sat, Mar 05, 2011 at 09:18:31PM +0100, martin f krafft wrote:
> also sprach Michael Hanke [2011.03.05.2034 +0100]:
> > Sounds like you want to convert it to NIfTI format. We have a number of
> > packages in Debian that can do that (dicomnifti, mriconvert, dcm2nii,
> > ...)
gzipping the file, without the need to uncompress it before
loading into an application) -- that should shrink the size on disk
quite a bit.
In case the software in Debian proper is not enough (although it
should): Here is more: http://neuro.debian.net/pkgs.html
HTH,
Michael
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these "one-minute" tasks that is done by a new contributor
adds a minute to the pool of time that can be spent on more demanding tasks
by another contributor.
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Michael
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On Fri, Dec 10, 2010 at 12:11:39AM -0200, Nelson A. de Oliveira wrote:
> On Fri, Dec 10, 2010 at 12:08 AM, Michael Hanke wrote:
> > I committed another set of changes, but then started to conflict with
> > 'naoliv' and stopped for now. When is the final deadline?
&g
gt; applying your patches. So if it better fits your workflow just commit
> directly.
I committed another set of changes, but then started to conflict with
'naoliv' and stopped for now. When is the final deadline?
Michael
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he general flow of the manuscript. Some paragraphs read
like lists of thoughts that might have to be extended to make them
easily comprehensible. Are there are space constraints?
Please feel free to discard any portion of the diff ;-)
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a matter of taste and you might decide
> yourself.
Whatever gets most responses?
"Entscheidend ist was hinten raus kommt!" [German ex-heavy weight champion]
Michael
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sk pages for a comprehensive list of included software
and the http://neuro.debian.net";>NeuroDebian
webpage for further information.
neuroimaging research
Debian Med
Debian Science
NeuroDebian
packagesants
packagesmrtrix
packagespsychopy
packagesodin
packagesnipype
Package: wnpp
Severity: wishlist
Owner: Michael Hanke
* Package name: invesalius
Version : 3.0.0
Upstream Author : Thiago Franco de Moraes and many more
* URL : http://svn.softwarepublico.gov.br/trac/invesalius
* License : GPL
Programming Lang: Python
"
#include
using namespace std;
int main()
{
cout << "Hello World!" << endl;
}
What change in ITK could cause this behavior. Any hints are very much
appreciated.
Thanks,
Michael
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Dear Debian-scientists,
on behalf of all the people making it possible to have neuroimaging
research software in Debian I'd like to announce that NeuroDebian is
this week's featured project on http://nitrc.org
NeuroDebian (http://neuro.debian.net) is a project that Yaroslav
Halchenko and I creat
On Sat, May 01, 2010 at 01:52:49AM -0500, Junqian Gordon Xu wrote:
> Just want to say hhanks for working on ITK-SNAP.
You're welcome. The package is now in NEW, but you can get it
from http://neuro.debian.net/pkgs/itksnap.html already.
Michael
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could represent
> debian-med there.
I'll be there (and Yaroslav Halchenko too). I have submitted my talk
proposal already, and although it is not exclusively about Debian Med
the ideas are pretty much the same. I cannot replace Andreas, but I'll
try to add my share ;-)
Michael
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On Thu, Apr 29, 2010 at 12:29:52AM +0200, Mathieu Malaterre wrote:
> On Wed, Apr 28, 2010 at 11:39 PM, Michael Hanke
> wrote:
> SET("gdcmCommon_LIB_DEPENDS" "")
>
> This is really a long standing issue in cmake. If this works for you,
> I'll try to
; Mathieu
> Ps: you should see how many dep VTK or ITK are pulling in...
I know. I just noticed that, right now, ITK also shippes duplicate of libnifti
and libznz that are provided by the libnifti1 package in Debian...
Michael
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theless, I get a linitan error pointing to the
license violation.
What can I do?
I thought '-Wl,--as-needed' would fix it, but it doesn't.
Help would be greatly appreciated.
Thanks,
Michael
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ckage. We introduced that package in 0.4.1 (Feb 2009),
so it must be older than that.
http://qa.debian.org/popcon.php?package=pymvpa
Michael
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with a subject of
ream also offers the code in git). Did you just
download that snapshot or have the code in a repository together with
the packaging?
Michael
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On Sun, Mar 14, 2010 at 09:15:11AM -0400, Michael Hanke wrote:
> Hi,
>
> I think there was some recent change regarding the non-free
> auto-builders, but I cannot figure out what it was.
> I have uploaded a new version of fsl a week ago, but since then only
> ia64 has been b
anybody know what is going on?
Thanks in advance,
Michael
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Arc
On Tue, Nov 24, 2009 at 10:59:23PM +0900, Charles Plessy wrote:
> Le Tue, Nov 24, 2009 at 02:39:05PM +0100, Andreas Tille a écrit :
> > On Tue, Nov 24, 2009 at 08:22:36AM -0500, Michael Hanke wrote:
> > >
> > > praat is essential for psychological research on speech pe
-- regardless
of the name of the team. ExpPsy can take it. However, we are probably
the smallest of all candidate teams. So, if there is a chance that it
would be better off staying in -science or -med that would be the
preferred choice, IMHO.
Michael
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> > listmas...@lists.debian.org
> >
> >
>
> --
> http://fam-tille.de
>
>
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On Tue, Jun 09, 2009 at 02:55:27PM +0200, Andreas Tille wrote:
> On Tue, Jun 09, 2009 at 01:36:34PM +0200, Michael Hanke wrote:
> > Hmmm,, Psychology is mch broader (being bold here since I am
> > Psychologist ;-)
>
> The fact that you see a need to be bold seem
ychophysical research. I'd say they have close to no
use for pratising psychologists.
Michael
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On Tue, Jun 09, 2009 at 01:30:25PM +0200, Andreas Tille wrote:
> On Tue, Jun 09, 2009 at 01:08:14PM +0200, Michael Hanke wrote:
> > while updating the status of ODIN in the imaging-dev task I saw that a
> > new psychology task has been added to debian-med. I wonder whether this
&
olgy task). Any hint is welcome.
I think it is ok. However, as I have already said on another post (very
recently) IMHO this might be more appropriate for debian-science.
Cheers,
Michael
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Hi,
while updating the status of ODIN in the imaging-dev task I saw that a
new psychology task has been added to debian-med. I wonder whether this
would not be more appropriate in the more general debian-science
context?
Cheers,
Michael
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http
On Wed, Mar 25, 2009 at 08:09:56PM -0500, Steve M. Robbins wrote:
> On Wed, Mar 25, 2009 at 08:13:24AM +0100, Michael Hanke wrote:
>
> > I took a quick look and it seems to be an easy target for packaging (at
> > first sight only the manpage seems to need some cor
er one -- OTOH it also doesn't
hurt to have it in both of them.
Michael
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On Wed, Mar 25, 2009 at 01:54:37PM +0100, Andreas Tille wrote:
> On Wed, 25 Mar 2009, Michael Hanke wrote:
>
>> In debian/control I have:
>>
>> Vcs-Browser: http://git.debian.org/?p=pkg-exppsy/odin.git
>> Vcs-Git: git://git.debian.org/git/pkg-exppsy/odin.git
>
On Wed, Mar 25, 2009 at 12:18:18PM +0100, Andreas Tille wrote:
> On Wed, 25 Mar 2009, Michael Hanke wrote:
>
>> http://debian-med.alioth.debian.org/tasks/imaging.html#odin
>>
>> from there you'll find the packaging repos on Alioth.
>
> The link to the reposito
Hi Charles,
On Wed, Mar 25, 2009 at 07:26:05PM +0900, Charles Plessy wrote:
> Le Wed, Mar 25, 2009 at 10:08:21AM +0100, Michael Hanke a écrit :
> >
> > For one thing I want to ask for your approval. I've put the -med
> > packaging team as primary maintainer and me as u
Hi,
On Mon, Mar 23, 2009 at 10:11:56PM +0100, Michael Hanke wrote:
> > > I am going to meet VIA upstream next week, and would like to make a list
> > > of
> > > things to discuss -- maybe adding points that popped up during ODIN
> > > packaging...
> >
h files to test mrisim?
In that case I would volunteer to package it. Otherwise I currently
cannot afford to fiddle with it right now.
Cheers,
Michael
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ndering what MRI is, is not a potential user ;-)
However, as there is plenty of space left there should be no need for
abbrevations. What about:
simulator for magnetic resonance imaging data
Cheers,
Michael
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I
Hi David,
On Mon, Mar 23, 2009 at 07:20:56PM +0100, David Paleino wrote:
> On Mon, 23 Mar 2009 15:44:28 +0100, Michael Hanke wrote:
> > I don't want to be annoying, but does anyone know about the status of
> > the ODIN packaging. I tried to contact David some days ago, but
uring ODIN packaging...
If ODIN packaging is stalled, and David is busy I might have time to
take over. Is there a prospective package somewhere? I cannot find it
in SVN or on mentors.
Thanks,
Michael
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On Sat, Mar 07, 2009 at 11:48:22PM +0100, Andreas Tille wrote:
> On Sat, 7 Mar 2009, Michael Hanke wrote:
>
>> I'd like to mention that Caret has just been accepted as an official
>> Debian package:
>>
>> http://packages.debian.org/sid/caret
>
>
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On Thu, Mar 05, 2009 at 02:34:50PM +0100, Andreas Tille wrote:
> On Thu, 5 Mar 2009, Michael Hanke wrote:
>
>> Andreas just pointed me to the unfortunate situation that my packages do
>> not show up in the 'has VCS stuff' sections on the task pages --
>> al
t would be good to prevent having potentially outdated duplicates
of information that is available from canonical locations.
Am I on the wrong track?
Michael
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ubmit an ITP now, since it makes no sense till the legal issues
are resolved.
Cheers,
Michael
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ply need to convert files from one format into another.
Michael
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> the GUI assumes a working 'g++' to compile and link the sequences
> on the fly, or 'gdb' and 'xterm' to debug sequences.
> Would it be possible to include these in the dependency list?
Thanks for letting us know!
Michael
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Hi,
I just stumbled upon this (fairly long) list of free medical software.
Perhaps something to extend the task files?
http://freemedsw.apfelkraut.org
Michael
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is a PDF itself not considered
problematic since it is most likely not the 'source'?
Simply ignore me if that PDF is compiled during the build process, since
I haven't even looked at the package.
Michael
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On Fri, Jan 09, 2009 at 05:12:34PM +0100, David Paleino wrote:
> On Fri, 9 Jan 2009 16:57:38 +0100, Michael Hanke wrote:
> > Sure. The other half of the topic is: Someone has to check each upstream
> > release whether upstream was correct in bumping or not bumping SO
> > vers
On Fri, Jan 09, 2009 at 04:43:08PM +0100, David Paleino wrote:
> On Fri, 9 Jan 2009 16:24:46 +0100, Michael Hanke wrote:
> > * What other application would these libraries use?
> >
> > I really think that these are intended for development _inside_ ODIN
> > and
ng the shared
> libraries and the binaries all in one package :)
What is it exactly that makes it crazy?
Michael
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Hi,
On Fri, Jan 09, 2009 at 03:37:42PM +0100, David Paleino wrote:
> On Fri, 9 Jan 2009 15:21:36 +0100, Michael Hanke wrote:
> libodin1, libodin-dev, libodin1-dbg, odin, odin-doc
>
> Obviously, after receiving a reply from upstream. ;)
Sure. Do as you like, but ask yourself:
Hi,
see below
On Fri, Jan 09, 2009 at 03:07:27PM +0100, David Paleino wrote:
> On Fri, 9 Jan 2009 09:32:42 +0100, David Paleino wrote:
>
> > On Thu, 8 Jan 2009 22:39:38 +0100, Michael Hanke wrote:
> >
> > > [..]
> > > On a related issue there is also
eforge.net
[3] http://bugs.debian.org/410318
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a partial checkout, but maybe a useful one.
Disclaimer: I haven't played with it yet -- I just stumbled upon it.
Michael
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wi
ributes, and
> conversion of proprietary image formats to DICOM. Can handle older
> ACR/NEMA format data, and some proprietary versions of that such as SPI.
I am still confused. The Debian package will ship binaries for Unix, Mac
and Windows? What for?
Michael
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On Mon, Jul 14, 2008 at 11:33:46PM +0200, Andreas Tille wrote:
> On Mon, 14 Jul 2008, Michael Hanke wrote:
>
>> You're right -- I'm sorry. I was following the discussion about CTN, but
>> I'm in the final phase of my PhD project and external forces reduce my
>
strip ctn down to
the pieces required by other packages (ctsim and dicomnifti). The will
probably lead to a minimal libctn-dev package.
Is this something we agree on?
Michael
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Hi,
On Wed, May 21, 2008 at 03:20:32PM +0200, Andreas Tille wrote:
> On Wed, 21 May 2008, Michael Hanke wrote:
>
>> Quick note: CTN seems to be already part of the debian-med SVN:
>>
>> http://svn.debian.org/wsvn/debian-med/trunk/packages/ctn/?rev=0&sc=0
>
>
On Wed, May 21, 2008 at 08:56:51AM +0200, Andreas Tille wrote:
> On Wed, 21 May 2008, Michael Hanke wrote:
>
>> I haven't looked at the package yet, but maybe it would make sense for
>> me to strip it down to the actually useful parts. If the overall popcon
>> count is
Hi,
On Wed, May 21, 2008 at 08:56:51AM +0200, Andreas Tille wrote:
> On Wed, 21 May 2008, Michael Hanke wrote:
>
>> I haven't looked at the package yet, but maybe it would make sense for
>> me to strip it down to the actually useful parts. If the overall popcon
>> cou
ed at the package yet, but maybe it would make sense for
me to strip it down to the actually useful parts. If the overall popcon
count is low, it might really be just a dev lib.
So, please do not remove it!
Michael
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On Wed, Mar 19, 2008 at 09:03:48AM +0100, Andreas Tille wrote:
> On Wed, 19 Mar 2008, Michael Hanke wrote:
>
>>> This pool contains several backported packages. I would recommend
>>> using backports.org for a better consolidation and helping users to
>>> f
t package needs a tiny bit of more work, so it is not yet
ready to go. This is mainly due to the size of the datasets shipped with
it. I have a solution, but it has to be polished before it can serve as
a proposal how to deal with big datasets.
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changes
[2] http://wiki.debian.org/DebianMedImaging
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signature.asc
Description: Digital signature
g the libvista upstream source on
the net, but I know that it is (or has been) there.
Cheers,
Michael
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On Mon, Dec 17, 2007 at 07:48:55AM +0100, Andreas Tille wrote:
> On Sat, 22 Sep 2007, Michael Hanke wrote:
>
>> are there any news about the progress of the volpack packaging? The last
>> entry of the bugreport tells me that the license is BSD now. The
>> upstream websi
[ I will reply to the FSL, volpack topic later, to not hijack the thread
;-) ]
On Mon, Dec 10, 2007 at 10:28:12AM +0100, Andreas Tille wrote:
> On Mon, 10 Dec 2007, Michael Hanke wrote:
>> I haven't looked at the bioimagesuite code, so please forgive my
>> ignorance, but p
e FSL code is
non-free.
I glad to help with that, please put me on the list or whatever it will
be.
Cheers,
Michael
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re:
http://lists.debian.org/debian-devel/2007/05/msg00105.html
Summary: The problem with public stats of special interest packages and
architectures is that they _might_ disclose _who_ is using the packages.
I'm not sure if the above cited concerns also fully apply here, though.
Cheers,
t, I'm not planing to do any
further work on them (even filing ITP bugs).
If someone wants to take them over, I'm happy to provide the
Debian-diffs as a starting point for the packages.
Cheers,
Michael
--
GPG key: 1024D/3144BE0F Michael Hanke
http://apsy.gse.uni-magdeburg.
Hi,
On Sun, Nov 11, 2007 at 04:13:09PM +0100, Andreas Tille wrote:
> On Sun, 11 Nov 2007, Michael Hanke wrote:
>> I like the idea, but it would only help solving the problem, if there
>> are actually some DDs reading it and acting accordingly.
>
> Sure. The sentinel we ar
ibuted nature of Git, it should be equally easy to get the package
sources and provide patches for it.
Cheers,
Michael
--
GPG key: 1024D/3144BE0F Michael Hanke
http://apsy.gse.uni-magdeburg.de/hanke
ICQ: 48230050
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I forgot one thing,
On Sat, Sep 22, 2007 at 09:35:10AM +0200, Michael Hanke wrote:
> I plan to do some more work on #409849 and volpack is a necessary
> dependency. Is there anything I can do to facilitate the process?
I understand that there have been some improvements to my initial
pac
on #409849 and volpack is a necessary
dependency. Is there anything I can do to facilitate the process?
Thanks,
Michael
--
GPG key: 1024D/3144BE0F Michael Hanke
http://apsy.gse.uni-magdeburg.de/hanke
ICQ: 48230050
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st December), the user is DebianMed and I sent the
password in a private message to you, Andreas Tille and Tobias Toedter.
This user should have it mail-address set to the debian-med mailing
list and should also be subscribed to the wiki changes.
Cheers,
Michael
--
GPG key: 1024D/3144BE0F Michael Hanke
http://apsy.gse.uni-magdeburg.de/hanke
ICQ: 48230050
On Wed, Aug 22, 2007 at 12:08:31PM +0200, Michael Hanke wrote:
> Hi,
>
> On Wed, Aug 22, 2007 at 12:01:51PM +0200, Roland Marcus Rutschmann wrote:
> > Hi,
> >
> > sorry I haven't looked to the page for a while but
> > PyNifti (aka python-nifti) and dini
lable via apt-get at
> deb http://apsy.gse.uni-magdeburg.de etch main
>
> kudos to Michael Hanke
>
> So a bit more "green" for the debian-med/imaging web-page.
The current status is documented on
http://wiki.debian.org/DebianMedImaging
I know I could have applied for
Hi,
On Tue, Jul 17, 2007 at 11:18:38PM +0200, Andreas Tille wrote:
> On Tue, 17 Jul 2007, Michael Hanke wrote:
> >Anyway, we packaged volpack:
> >
> >http://svn.debian.org/wsvn/pkg-exppsy/volpack/?rev=0&sc=0
>
> So would this been ready for sponsoring? If yes,
Anyway, we packaged volpack:
http://svn.debian.org/wsvn/pkg-exppsy/volpack/?rev=0&sc=0
But unfortunately discovered that libfame is non-free.
As none of us wanted to maintain another non-free package the whole
process stopped at that point.
Cheers,
Michael
--
GPG key: 1024D/3144BE0F Michael Hanke
http://apsy.gse.uni-magdeburg.de/hanke
ICQ: 48230050
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pkg-exppsy project on Alioth or at mentors.
And yes I need sponsor(s), as for some reason I cannot dedicate
enough time to my NM process (stuck at T&S part 1).
--
GPG key: 1024D/3144BE0F Michael Hanke
http://apsy.gse.uni-magdeburg.de/hanke
ICQ: 48230050
--
To UNSUBSCRIBE, email to [EMAIL PROTECTED]
with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]
[ and mine was supposed to go to the list ;) ]
- Forwarded message from Michael Hanke <[EMAIL PROTECTED]> -
Date: Sun, 15 Apr 2007 09:57:48 +0200
From: Michael Hanke <[EMAIL PROTECTED]>
To: Steffen Moeller <[EMAIL PROTECTED]>
Subject: Re: VM image to promote
e example
installation of Debian etch.
I'd be glad to hear your comments. I'd be especially interested in
information if a similar project already exists and what I can do to get
the highest benefit for the Debian project.
Thanks in advance,
Michael
--
GPG key: 1024D/3144BE0
laints before I get some feedback
that my decisions are reasonable.
I hope I can attract someone this time ;)
Thanks in advance.
Cheers,
Michael
--
GPG key: 1024D/3144BE0F Michael Hanke
http://apsy.gse.uni-magdeburg.de/hanke
ICQ: 48230050
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Hi,
On Tue, Feb 06, 2007 at 08:36:14AM +0100, Andreas Tille wrote:
> On Mon, 5 Feb 2007, Michael Hanke wrote:
> >AFNI is an environment for processing and displaying functional MRI data.
> >It provides a complete analysis toolchain, including 3D cortical surface
> >mode
Hi,
On Thu, Nov 30, 2006 at 09:26:00PM +0100, Andreas Tille wrote:
> On Thu, 30 Nov 2006, Michael Hanke wrote:
>
> >Thanks for pointing me to the translations, I completely ignored this.
> >You're definitely right!
>
> Ah well, you young fools, you. ;-))
Hi,
On Thu, Nov 30, 2006 at 11:28:25AM +0100, Andreas Tille wrote:
> On Thu, 30 Nov 2006, Michael Hanke wrote:
> While you are right that the really included contents has highest
> priority, the not yet included stuff has its sense:
>
> * TODO list for people seeking
Hi,
On Thu, Nov 30, 2006 at 10:10:38AM +0900, Charles Plessy wrote:
> Le Wed, Nov 29, 2006 at 10:29:02PM +0100, Andreas Tille a écrit :
> > On Wed, 29 Nov 2006, Michael Hanke wrote:
> > > dinifti - Debian package not available
> > >
> > >This should be upd
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