Re: sponsoring or upload rights: itksnap

2016-01-10 Thread Michael Hanke
Hi, On Sun, Jan 10, 2016 at 1:57 PM, Andreas Tille wrote: > On Sun, Jan 10, 2016 at 01:48:58PM +0100, Michael Hanke wrote: > > > > I am building it right now. As for giving you upload permissions, I'd > > support this -- but I have to look up the procedure. Plea

Re: sponsoring or upload rights: itksnap

2016-01-10 Thread Michael Hanke
bug. I will close this manually > once this upload is done. > > - #789931 relates to arm64 and ITK4 is not available there > (hence I will mark this wontfix and downgrade it to normal) > > Many thanks, > Gert > > > > > -- Michael Hanke http://mih.voxindeserto.de

Re: [MoM] Re: bart - tools for computational magnetic resonance imaging

2015-12-06 Thread Michael Hanke
Hi, > > I also want to add octave/matlab/python scripts. But I am not > > sure where to put them. I would be nice if there was a way to > > add them to the default search path for octave/matlab, for > > example. > > You could add these in additional python-bart octave-bart binary > packages (sorry

Re: Imaging experts opinion wanted: Should we keep ctn?

2013-07-16 Thread Michael Hanke
Hi, On Tue, Jul 16, 2013 at 9:04 AM, Andreas Tille wrote: > Hi, > > I remember that I had a hard time when I updated ctn the last time which > was five years ago. Upstream did not even issued a new version since > ten years. So I wonder what you might think about ctn: Should I simply > updat

Re: Splitting imaging into two separate tasks

2012-07-20 Thread Michael Hanke
On Thu, Jul 19, 2012 at 04:15:35PM +0200, Andreas Tille wrote: > On Thu, Jul 19, 2012 at 02:34:02PM +0200, Michael Hanke wrote: > > On Wed, Jul 18, 2012 at 09:04:34AM +0200, Andreas Tille wrote: > > > I was wondering whether the user base for these different kinds of > > &

Re: Splitting imaging into two separate tasks

2012-07-19 Thread Michael Hanke
orward to a have debtags(-like) scheme to assemble tasks from packages, where any package can be assigned to any task, simply by adding the corresponding tag. In this scenario, there seems to be very little cost of having arbitrarily fine-grained tasks (and any number of them). Michael -- M

Re: [OT - or may be not] The case for open computer programs

2012-05-29 Thread Michael Hanke
On Tue, May 29, 2012 at 08:00:57AM +0200, Andreas Tille wrote: > http://www.nature.com/nature/journal/v482/n7386/full/nature10836.html In case you don't want to pay Nature to read about this, you can alternatively pay Science... http://www.sciencemag.org/content/336/6078/159 -- Micha

Re: Plans for ITK version 4

2012-01-24 Thread Michael Hanke
backup would certainly help to make everyones life much easier. Kudos to Steve and Mathieu for all their effort to make this available in Debian. Michael -- Michael Hanke http://mih.voxindeserto.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "uns

Re: Ping (Was: Status of InVesalius packaging (Was: Status of SIGAR))

2011-04-09 Thread Michael Hanke
? AFAIK the only problem is lack of time for all involved parties. If you can afford to spend some of yours, I'm pretty sure everybody would be happy. I'm CC'ing Thiago, maybe he knows more. Thanks, Michael -- Michael Hanke http://mih.voxindeserto.de -- To UNSUBSCRIB

Re: Status of InVesalius packaging (Was: Status of SIGAR (Was: InVesalius packaging))

2011-03-17 Thread Michael Hanke
in this case master. The debian packaging is in the 'debian' branch (see below for reason). To get there: git checkout -b debian origin/debian > On Thu, Mar 17, 2011 at 09:54:04AM -0400, Michael Hanke wrote: > > > > Upstream has sigar on github. It felt good to stay close to u

Re: Status of InVesalius packaging (Was: Status of SIGAR (Was: InVesalius packaging))

2011-03-17 Thread Michael Hanke
s I might have a look. Feel free to move it. For a quick look: git clone git://github.com/hanke/sigar.git Michael -- Michael Hanke http://mih.voxindeserto.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact list

Re: Status of InVesalius packaging (Was: Status of SIGAR (Was: InVesalius packaging))

2011-03-17 Thread Michael Hanke
Forgot this one: On Thu, Mar 17, 2011 at 02:30:53PM +0100, Andreas Tille wrote: > > But the other problems I > > haven't seen yet. Michael Hanke created a branch in github to do the > > sigar packaging (https://github.com/hanke/sigar/tree/debian) and I > > forked that

Re: Status of InVesalius packaging (Was: Status of SIGAR (Was: InVesalius packaging))

2011-03-17 Thread Michael Hanke
o move these things foreward. I think the issue here is lack of time, all those things are trivial to fix -- just nobody has gotten to it yet. Michael -- Michael Hanke http://mih.voxindeserto.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsu

Re: archiving DICOM imagery for human consumption

2011-03-05 Thread Michael Hanke
On Sat, Mar 05, 2011 at 09:18:31PM +0100, martin f krafft wrote: > also sprach Michael Hanke [2011.03.05.2034 +0100]: > > Sounds like you want to convert it to NIfTI format. We have a number of > > packages in Debian that can do that (dicomnifti, mriconvert, dcm2nii, > > ...)

Re: archiving DICOM imagery for human consumption

2011-03-05 Thread Michael Hanke
gzipping the file, without the need to uncompress it before loading into an application) -- that should shrink the size on disk quite a bit. In case the software in Debian proper is not enough (although it should): Here is more: http://neuro.debian.net/pkgs.html HTH, Michael -- Michael Hanke

Re: Please go tagging

2011-01-31 Thread Michael Hanke
these "one-minute" tasks that is done by a new contributor adds a minute to the pool of time that can be spent on more demanding tasks by another contributor. Thanks, Michael -- Michael Hanke http://mih.voxindeserto.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.

Re: Please proofread paper

2010-12-09 Thread Michael Hanke
On Fri, Dec 10, 2010 at 12:11:39AM -0200, Nelson A. de Oliveira wrote: > On Fri, Dec 10, 2010 at 12:08 AM, Michael Hanke wrote: > > I committed another set of changes, but then started to conflict with > > 'naoliv' and stopped for now. When is the final deadline? &g

Re: Please proofread paper

2010-12-09 Thread Michael Hanke
gt; applying your patches. So if it better fits your workflow just commit > directly. I committed another set of changes, but then started to conflict with 'naoliv' and stopped for now. When is the final deadline? Michael -- Michael Hanke http://mih.voxindeserto.de -- To UNSUBSC

Re: Please proofread paper

2010-12-08 Thread Michael Hanke
he general flow of the manuscript. Some paragraphs read like lists of thoughts that might have to be extended to make them easily comprehensible. Are there are space constraints? Please feel free to discard any portion of the diff ;-) Michael -- Michael Hanke http://mih.voxindeserto.de

Re: Drafting release notes

2010-09-24 Thread Michael Hanke
a matter of taste and you might decide > yourself. Whatever gets most responses? "Entscheidend ist was hinten raus kommt!" [German ex-heavy weight champion] Michael -- GPG key: 1024D/3144BE0F Michael Hanke http://mih.voxindeserto.de -- To UNSUBSCRIBE, email to debian-med-requ..

Drafting release notes

2010-09-23 Thread Michael Hanke
sk pages for a comprehensive list of included software and the http://neuro.debian.net";>NeuroDebian webpage for further information. neuroimaging research Debian Med Debian Science NeuroDebian packagesants packagesmrtrix packagespsychopy packagesodin packagesnipype

Bug#584920: ITP: invesalius -- 3D medical imaging reconstruction toolkit

2010-06-07 Thread Michael Hanke
Package: wnpp Severity: wishlist Owner: Michael Hanke * Package name: invesalius Version : 3.0.0 Upstream Author : Thiago Franco de Moraes and many more * URL : http://svn.softwarepublico.gov.br/trac/invesalius * License : GPL Programming Lang: Python

Problem ITK 3.16 -> 3.18

2010-05-27 Thread Michael Hanke
" #include using namespace std; int main() { cout << "Hello World!" << endl; } What change in ITK could cause this behavior. Any hints are very much appreciated. Thanks, Michael -- GPG key: 1024D/3144BE0F Michael Hanke http://mih.voxindeserto.de -- To

NeuroDebian is this weeks featured project on NITRC.org

2010-05-08 Thread Michael Hanke
Dear Debian-scientists, on behalf of all the people making it possible to have neuroimaging research software in Debian I'd like to announce that NeuroDebian is this week's featured project on http://nitrc.org NeuroDebian (http://neuro.debian.net) is a project that Yaroslav Halchenko and I creat

ITK-SNAP package available (was: Howto prevent viral dependency propagation by ITK or GDCM?)

2010-05-01 Thread Michael Hanke
On Sat, May 01, 2010 at 01:52:49AM -0500, Junqian Gordon Xu wrote: > Just want to say hhanks for working on ITK-SNAP. You're welcome. The package is now in NEW, but you can get it from http://neuro.debian.net/pkgs/itksnap.html already. Michael -- GPG key: 1024D/3144BE0F Michael Ha

Re: debian-med and Debconf10

2010-04-30 Thread Michael Hanke
could represent > debian-med there. I'll be there (and Yaroslav Halchenko too). I have submitted my talk proposal already, and although it is not exclusively about Debian Med the ideas are pretty much the same. I cannot replace Andreas, but I'll try to add my share ;-) Michael -- GPG

Re: Howto prevent viral dependency propagation by ITK or GDCM?

2010-04-29 Thread Michael Hanke
On Thu, Apr 29, 2010 at 12:29:52AM +0200, Mathieu Malaterre wrote: > On Wed, Apr 28, 2010 at 11:39 PM, Michael Hanke > wrote: > SET("gdcmCommon_LIB_DEPENDS" "") > > This is really a long standing issue in cmake. If this works for you, > I'll try to

Re: Howto prevent viral dependency propagation by ITK or GDCM?

2010-04-28 Thread Michael Hanke
; Mathieu > Ps: you should see how many dep VTK or ITK are pulling in... I know. I just noticed that, right now, ITK also shippes duplicate of libnifti and libznz that are provided by the libnifti1 package in Debian... Michael -- GPG key: 1024D/3144BE0F Michael Hanke http://mih.voxindeserto.

Howto prevent viral dependency propagation by ITK or GDCM?

2010-04-28 Thread Michael Hanke
theless, I get a linitan error pointing to the license violation. What can I do? I thought '-Wl,--as-needed' would fix it, but it doesn't. Help would be greatly appreciated. Thanks, Michael -- GPG key: 1024D/3144BE0F Michael Hanke http://mih.voxindeserto.de -- To UNSUBS

Re: Big jump in popularity-contest.

2010-04-12 Thread Michael Hanke
ckage. We introduced that package in 0.4.1 (Feb 2009), so it must be older than that. http://qa.debian.org/popcon.php?package=pymvpa Michael -- GPG key: 1024D/3144BE0F Michael Hanke http://mih.voxindeserto.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of

Re: Status of SIGAR (Was: InVesalius packaging)

2010-03-29 Thread Michael Hanke
ream also offers the code in git). Did you just download that snapshot or have the code in a repository together with the packaging? Michael -- GPG key: 1024D/3144BE0F Michael Hanke http://mih.voxindeserto.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of

Re: Status of non-free auto-builders?

2010-03-23 Thread Michael Hanke
On Sun, Mar 14, 2010 at 09:15:11AM -0400, Michael Hanke wrote: > Hi, > > I think there was some recent change regarding the non-free > auto-builders, but I cannot figure out what it was. > I have uploaded a new version of fsl a week ago, but since then only > ia64 has been b

Status of non-free auto-builders?

2010-03-14 Thread Michael Hanke
anybody know what is going on? Thanks in advance, Michael -- GPG key: 1024D/3144BE0F Michael Hanke http://mih.voxindeserto.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Arc

Re: [Pkg-exppsy-maintainers] Team maintenance of Praat?

2009-11-24 Thread Michael Hanke
On Tue, Nov 24, 2009 at 10:59:23PM +0900, Charles Plessy wrote: > Le Tue, Nov 24, 2009 at 02:39:05PM +0100, Andreas Tille a écrit : > > On Tue, Nov 24, 2009 at 08:22:36AM -0500, Michael Hanke wrote: > > > > > > praat is essential for psychological research on speech pe

Re: [Pkg-exppsy-maintainers] Team maintenance of Praat?

2009-11-24 Thread Michael Hanke
-- regardless of the name of the team. ExpPsy can take it. However, we are probably the smallest of all candidate teams. So, if there is a chance that it would be better off staying in -science or -med that would be the preferred choice, IMHO. Michael -- GPG key: 1024D/3144BE0F Michael Hanke http:/

Re: Maintaining praat in Debian Med team?

2009-10-06 Thread Michael Hanke
cribe". Trouble? Contact > > listmas...@lists.debian.org > > > > > > -- > http://fam-tille.de > > > -- > To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org > with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org -- GPG key: 1024D/3144BE0F Michael Hanke http://mih.voxindeserto.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org

Re: Psychology task

2009-06-09 Thread Michael Hanke
On Tue, Jun 09, 2009 at 02:55:27PM +0200, Andreas Tille wrote: > On Tue, Jun 09, 2009 at 01:36:34PM +0200, Michael Hanke wrote: > > Hmmm,, Psychology is mch broader (being bold here since I am > > Psychologist ;-) > > The fact that you see a need to be bold seem

Re: Psychology task

2009-06-09 Thread Michael Hanke
ychophysical research. I'd say they have close to no use for pratising psychologists. Michael -- GPG key: 1024D/3144BE0F Michael Hanke http://apsy.gse.uni-magdeburg.de/hanke ICQ: 48230050 -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org

Re: Psychology task

2009-06-09 Thread Michael Hanke
On Tue, Jun 09, 2009 at 01:30:25PM +0200, Andreas Tille wrote: > On Tue, Jun 09, 2009 at 01:08:14PM +0200, Michael Hanke wrote: > > while updating the status of ODIN in the imaging-dev task I saw that a > > new psychology task has been added to debian-med. I wonder whether this &

Re: New task: psychology; new tasks pages (Was: Bug#532111: ITP: psychopy -- module for creating psychology stimuli in Python)

2009-06-09 Thread Michael Hanke
olgy task). Any hint is welcome. I think it is ok. However, as I have already said on another post (very recently) IMHO this might be more appropriate for debian-science. Cheers, Michael -- GPG key: 1024D/3144BE0F Michael Hanke http://apsy.gse.uni-magdeburg.de/hanke ICQ: 48230050 -- To UN

Psychology task

2009-06-09 Thread Michael Hanke
Hi, while updating the status of ODIN in the imaging-dev task I saw that a new psychology task has been added to debian-med. I wonder whether this would not be more appropriate in the more general debian-science context? Cheers, Michael -- GPG key: 1024D/3144BE0F Michael Hanke http

Re: software for tasks/imaging

2009-03-27 Thread Michael Hanke
On Wed, Mar 25, 2009 at 08:09:56PM -0500, Steve M. Robbins wrote: > On Wed, Mar 25, 2009 at 08:13:24AM +0100, Michael Hanke wrote: > > > I took a quick look and it seems to be an easy target for packaging (at > > first sight only the manpage seems to need some cor

Re: ODIN! (was: ODIN, anyone?)

2009-03-25 Thread Michael Hanke
er one -- OTOH it also doesn't hurt to have it in both of them. Michael -- GPG key: 1024D/3144BE0F Michael Hanke http://apsy.gse.uni-magdeburg.de/hanke ICQ: 48230050 -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org

Re: ODIN! (was: ODIN, anyone?)

2009-03-25 Thread Michael Hanke
On Wed, Mar 25, 2009 at 01:54:37PM +0100, Andreas Tille wrote: > On Wed, 25 Mar 2009, Michael Hanke wrote: > >> In debian/control I have: >> >> Vcs-Browser: http://git.debian.org/?p=pkg-exppsy/odin.git >> Vcs-Git: git://git.debian.org/git/pkg-exppsy/odin.git >

Re: ODIN! (was: ODIN, anyone?)

2009-03-25 Thread Michael Hanke
On Wed, Mar 25, 2009 at 12:18:18PM +0100, Andreas Tille wrote: > On Wed, 25 Mar 2009, Michael Hanke wrote: > >> http://debian-med.alioth.debian.org/tasks/imaging.html#odin >> >> from there you'll find the packaging repos on Alioth. > > The link to the reposito

Re: ODIN! (was: ODIN, anyone?)

2009-03-25 Thread Michael Hanke
Hi Charles, On Wed, Mar 25, 2009 at 07:26:05PM +0900, Charles Plessy wrote: > Le Wed, Mar 25, 2009 at 10:08:21AM +0100, Michael Hanke a écrit : > > > > For one thing I want to ask for your approval. I've put the -med > > packaging team as primary maintainer and me as u

ODIN! (was: ODIN, anyone?)

2009-03-25 Thread Michael Hanke
Hi, On Mon, Mar 23, 2009 at 10:11:56PM +0100, Michael Hanke wrote: > > > I am going to meet VIA upstream next week, and would like to make a list > > > of > > > things to discuss -- maybe adding points that popped up during ODIN > > > packaging... > >

Re: software for tasks/imaging

2009-03-25 Thread Michael Hanke
h files to test mrisim? In that case I would volunteer to package it. Otherwise I currently cannot afford to fiddle with it right now. Cheers, Michael -- GPG key: 1024D/3144BE0F Michael Hanke http://apsy.gse.uni-magdeburg.de/hanke ICQ: 48230050 -- To UNSUBSCRIBE, email to debian-med-requ...

Re: r1455 - projects/med/trunk/debian-med/tasks

2009-03-24 Thread Michael Hanke
ndering what MRI is, is not a potential user ;-) However, as there is plenty of space left there should be no need for abbrevations. What about: simulator for magnetic resonance imaging data Cheers, Michael -- GPG key: 1024D/3144BE0F Michael Hanke http://apsy.gse.uni-magdeburg.de/hanke I

Re: ODIN, anyone?

2009-03-23 Thread Michael Hanke
Hi David, On Mon, Mar 23, 2009 at 07:20:56PM +0100, David Paleino wrote: > On Mon, 23 Mar 2009 15:44:28 +0100, Michael Hanke wrote: > > I don't want to be annoying, but does anyone know about the status of > > the ODIN packaging. I tried to contact David some days ago, but

ODIN, anyone?

2009-03-23 Thread Michael Hanke
uring ODIN packaging... If ODIN packaging is stalled, and David is busy I might have time to take over. Is there a prospective package somewhere? I cannot find it in SVN or on mentors. Thanks, Michael -- GPG key: 1024D/3144BE0F Michael Hanke http://apsy.gse.uni-magdeburg.de/hanke ICQ: 482

Re: Caret in Debian

2009-03-07 Thread Michael Hanke
On Sat, Mar 07, 2009 at 11:48:22PM +0100, Andreas Tille wrote: > On Sat, 7 Mar 2009, Michael Hanke wrote: > >> I'd like to mention that Caret has just been accepted as an official >> Debian package: >> >> http://packages.debian.org/sid/caret > >

Caret in Debian

2009-03-07 Thread Michael Hanke
4BE0F Michael Hanke http://apsy.gse.uni-magdeburg.de/hanke ICQ: 48230050 -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org

Re: VCS information in task files

2009-03-05 Thread Michael Hanke
On Thu, Mar 05, 2009 at 02:34:50PM +0100, Andreas Tille wrote: > On Thu, 5 Mar 2009, Michael Hanke wrote: > >> Andreas just pointed me to the unfortunate situation that my packages do >> not show up in the 'has VCS stuff' sections on the task pages -- >> al

VCS information in task files

2009-03-05 Thread Michael Hanke
t would be good to prevent having potentially outdated duplicates of information that is available from canonical locations. Am I on the wrong track? Michael -- GPG key: 1024D/3144BE0F Michael Hanke http://apsy.gse.uni-magdeburg.de/hanke ICQ: 48230050 -- To UNSUBSCRIBE, email

VISTA, VIA, MIA

2009-03-04 Thread Michael Hanke
ubmit an ITP now, since it makes no sense till the legal issues are resolved. Cheers, Michael -- GPG key: 1024D/3144BE0F Michael Hanke http://apsy.gse.uni-magdeburg.de/hanke ICQ: 48230050 -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org

Re: debian OID / dicom3tools packaging

2009-01-27 Thread Michael Hanke
ply need to convert files from one format into another. Michael -- GPG key: 1024D/3144BE0F Michael Hanke http://apsy.gse.uni-magdeburg.de/hanke ICQ: 48230050 -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org

Re: Some suggestions for packaging of Odin

2009-01-14 Thread Michael Hanke
> the GUI assumes a working 'g++' to compile and link the sequences > on the fly, or 'gdb' and 'xterm' to debug sequences. > Would it be possible to include these in the dependency list? Thanks for letting us know! Michael -- GPG key: 1024D/3144BE0F M

List of free medical software

2009-01-13 Thread Michael Hanke
Hi, I just stumbled upon this (fairly long) list of free medical software. Perhaps something to extend the task files? http://freemedsw.apfelkraut.org Michael -- GPG key: 1024D/3144BE0F Michael Hanke http://apsy.gse.uni-magdeburg.de/hanke ICQ: 48230050 -- To UNSUBSCRIBE, email to debian

Re: dicomscope documentation

2009-01-12 Thread Michael Hanke
is a PDF itself not considered problematic since it is most likely not the 'source'? Simply ignore me if that PDF is compiled during the build process, since I haven't even looked at the package. Michael -- GPG key: 1024D/3144BE0F Michael Hanke http://apsy.gse.uni-magd

Re: RFC: packaging layout for Odin

2009-01-09 Thread Michael Hanke
On Fri, Jan 09, 2009 at 05:12:34PM +0100, David Paleino wrote: > On Fri, 9 Jan 2009 16:57:38 +0100, Michael Hanke wrote: > > Sure. The other half of the topic is: Someone has to check each upstream > > release whether upstream was correct in bumping or not bumping SO > > vers

Re: RFC: packaging layout for Odin

2009-01-09 Thread Michael Hanke
On Fri, Jan 09, 2009 at 04:43:08PM +0100, David Paleino wrote: > On Fri, 9 Jan 2009 16:24:46 +0100, Michael Hanke wrote: > > * What other application would these libraries use? > > > > I really think that these are intended for development _inside_ ODIN > > and

Re: RFC: packaging layout for Odin

2009-01-09 Thread Michael Hanke
ng the shared > libraries and the binaries all in one package :) What is it exactly that makes it crazy? Michael -- GPG key: 1024D/3144BE0F Michael Hanke http://apsy.gse.uni-magdeburg.de/hanke ICQ: 48230050 -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subjec

Re: RFC: packaging layout for Odin

2009-01-09 Thread Michael Hanke
Hi, On Fri, Jan 09, 2009 at 03:37:42PM +0100, David Paleino wrote: > On Fri, 9 Jan 2009 15:21:36 +0100, Michael Hanke wrote: > libodin1, libodin-dev, libodin1-dbg, odin, odin-doc > > Obviously, after receiving a reply from upstream. ;) Sure. Do as you like, but ask yourself:

Re: RFC: packaging layout for Odin (was: Re: Status of ODIN, VISTA and friends)

2009-01-09 Thread Michael Hanke
Hi, see below On Fri, Jan 09, 2009 at 03:07:27PM +0100, David Paleino wrote: > On Fri, 9 Jan 2009 09:32:42 +0100, David Paleino wrote: > > > On Thu, 8 Jan 2009 22:39:38 +0100, Michael Hanke wrote: > > > > > [..] > > > On a related issue there is also

Status of ODIN, VISTA and friends

2009-01-08 Thread Michael Hanke
eforge.net [3] http://bugs.debian.org/410318 -- GPG key: 1024D/3144BE0F Michael Hanke http://apsy.gse.uni-magdeburg.de/hanke ICQ: 48230050 -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org

Git submodules

2008-12-17 Thread Michael Hanke
a partial checkout, but maybe a useful one. Disclaimer: I haven't played with it yet -- I just stumbled upon it. Michael -- GPG key: 1024D/3144BE0F Michael Hanke http://apsy.gse.uni-magdeburg.de/hanke ICQ: 48230050 -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org wi

Re: dicom3tool on task page

2008-12-16 Thread Michael Hanke
ributes, and > conversion of proprietary image formats to DICOM. Can handle older > ACR/NEMA format data, and some proprietary versions of that such as SPI. I am still confused. The Debian package will ship binaries for Unix, Mac and Windows? What for? Michael -- GPG key: 1024D/3144BE0F

Re: PLEASE HELP WITH CTN (Was: CTN status)

2008-07-15 Thread Michael Hanke
On Mon, Jul 14, 2008 at 11:33:46PM +0200, Andreas Tille wrote: > On Mon, 14 Jul 2008, Michael Hanke wrote: > >> You're right -- I'm sorry. I was following the discussion about CTN, but >> I'm in the final phase of my PhD project and external forces reduce my >

Re: PLEASE HELP WITH CTN (Was: CTN status)

2008-07-14 Thread Michael Hanke
strip ctn down to the pieces required by other packages (ctsim and dicomnifti). The will probably lead to a minimal libctn-dev package. Is this something we agree on? Michael -- GPG key: 1024D/3144BE0F Michael Hanke http://apsy.gse.uni-magdeburg.de/hanke ICQ: 48230050 -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]

Re: Giving away CTN

2008-05-21 Thread Michael Hanke
Hi, On Wed, May 21, 2008 at 03:20:32PM +0200, Andreas Tille wrote: > On Wed, 21 May 2008, Michael Hanke wrote: > >> Quick note: CTN seems to be already part of the debian-med SVN: >> >> http://svn.debian.org/wsvn/debian-med/trunk/packages/ctn/?rev=0&sc=0 > >

Re: Giving away CTN

2008-05-21 Thread Michael Hanke
On Wed, May 21, 2008 at 08:56:51AM +0200, Andreas Tille wrote: > On Wed, 21 May 2008, Michael Hanke wrote: > >> I haven't looked at the package yet, but maybe it would make sense for >> me to strip it down to the actually useful parts. If the overall popcon >> count is

Re: Giving away CTN

2008-05-21 Thread Michael Hanke
Hi, On Wed, May 21, 2008 at 08:56:51AM +0200, Andreas Tille wrote: > On Wed, 21 May 2008, Michael Hanke wrote: > >> I haven't looked at the package yet, but maybe it would make sense for >> me to strip it down to the actually useful parts. If the overall popcon >> cou

Re: Giving away CTN

2008-05-20 Thread Michael Hanke
ed at the package yet, but maybe it would make sense for me to strip it down to the actually useful parts. If the overall popcon count is low, it might really be just a dev lib. So, please do not remove it! Michael -- GPG key: 1024D/3144BE0F Michael Hanke http://apsy.gse.uni-magdeburg.de/hank

Re: Inofficial packages for medical imaging

2008-03-21 Thread Michael Hanke
On Wed, Mar 19, 2008 at 09:03:48AM +0100, Andreas Tille wrote: > On Wed, 19 Mar 2008, Michael Hanke wrote: > >>> This pool contains several backported packages. I would recommend >>> using backports.org for a better consolidation and helping users to >>> f

Re: Inofficial packages for medical imaging

2008-03-19 Thread Michael Hanke
t package needs a tiny bit of more work, so it is not yet ready to go. This is mainly due to the size of the datasets shipped with it. I have a solution, but it has to be polished before it can serve as a proposal how to deal with big datasets. -- GPG key: 1024D/3144BE0F Michael Hanke http://apsy

FSL in Debian non-free

2007-12-22 Thread Michael Hanke
changes [2] http://wiki.debian.org/DebianMedImaging -- GPG key: 1024D/3144BE0F Michael Hanke http://apsy.gse.uni-magdeburg.de/hanke ICQ: 48230050 signature.asc Description: Digital signature

Re: ODIN

2007-12-17 Thread Michael Hanke
g the libvista upstream source on the net, but I know that it is (or has been) there. Cheers, Michael -- GPG key: 1024D/3144BE0F Michael Hanke http://apsy.gse.uni-magdeburg.de/hanke ICQ: 48230050 -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]

Re: Progress of the volpack Debian packaging?

2007-12-16 Thread Michael Hanke
On Mon, Dec 17, 2007 at 07:48:55AM +0100, Andreas Tille wrote: > On Sat, 22 Sep 2007, Michael Hanke wrote: > >> are there any news about the progress of the volpack packaging? The last >> entry of the bugreport tells me that the license is BSD now. The >> upstream websi

Re: Working on BioImage Suite 2.5 beta source tree

2007-12-10 Thread Michael Hanke
[ I will reply to the FSL, volpack topic later, to not hijack the thread ;-) ] On Mon, Dec 10, 2007 at 10:28:12AM +0100, Andreas Tille wrote: > On Mon, 10 Dec 2007, Michael Hanke wrote: >> I haven't looked at the bioimagesuite code, so please forgive my >> ignorance, but p

Re: Working on BioImage Suite 2.5 beta source tree

2007-12-10 Thread Michael Hanke
e FSL code is non-free. I glad to help with that, please put me on the list or whatever it will be. Cheers, Michael -- GPG key: 1024D/3144BE0F Michael Hanke http://apsy.gse.uni-magdeburg.de/hanke ICQ: 48230050 signature.asc Description: Digital signature

Re: Mining popocon data

2007-11-21 Thread Michael Hanke
re: http://lists.debian.org/debian-devel/2007/05/msg00105.html Summary: The problem with public stats of special interest packages and architectures is that they _might_ disclose _who_ is using the packages. I'm not sure if the above cited concerns also fully apply here, though. Cheers,

Re: Status of Medical Image NetCDF (minc) library

2007-11-12 Thread Michael Hanke
t, I'm not planing to do any further work on them (even filing ITP bugs). If someone wants to take them over, I'm happy to provide the Debian-diffs as a starting point for the packages. Cheers, Michael -- GPG key: 1024D/3144BE0F Michael Hanke http://apsy.gse.uni-magdeburg.

Re: Watching mentors and nifticlib

2007-11-11 Thread Michael Hanke
Hi, On Sun, Nov 11, 2007 at 04:13:09PM +0100, Andreas Tille wrote: > On Sun, 11 Nov 2007, Michael Hanke wrote: >> I like the idea, but it would only help solving the problem, if there >> are actually some DDs reading it and acting accordingly. > > Sure. The sentinel we ar

Re: Watching mentors and nifticlib

2007-11-11 Thread Michael Hanke
ibuted nature of Git, it should be equally easy to get the package sources and provide patches for it. Cheers, Michael -- GPG key: 1024D/3144BE0F Michael Hanke http://apsy.gse.uni-magdeburg.de/hanke ICQ: 48230050 signature.asc Description: Digital signature

Re: Progress of the volpack Debian packaging?

2007-09-22 Thread Michael Hanke
I forgot one thing, On Sat, Sep 22, 2007 at 09:35:10AM +0200, Michael Hanke wrote: > I plan to do some more work on #409849 and volpack is a necessary > dependency. Is there anything I can do to facilitate the process? I understand that there have been some improvements to my initial pac

Progress of the volpack Debian packaging?

2007-09-22 Thread Michael Hanke
on #409849 and volpack is a necessary dependency. Is there anything I can do to facilitate the process? Thanks, Michael -- GPG key: 1024D/3144BE0F Michael Hanke http://apsy.gse.uni-magdeburg.de/hanke ICQ: 48230050 signature.asc Description: Digital signature

Re: Subscribing a mailing list to page changes on the wiki.

2007-08-27 Thread Michael Hanke
st December), the user is DebianMed and I sent the password in a private message to you, Andreas Tille and Tobias Toedter. This user should have it mail-address set to the debian-med mailing list and should also be subscribed to the wiki changes. Cheers, Michael -- GPG key: 1024D/3144BE0F Michael Hanke http://apsy.gse.uni-magdeburg.de/hanke ICQ: 48230050

Re: med-imaging web status (was Re: opendicom)

2007-08-22 Thread Michael Hanke
On Wed, Aug 22, 2007 at 12:08:31PM +0200, Michael Hanke wrote: > Hi, > > On Wed, Aug 22, 2007 at 12:01:51PM +0200, Roland Marcus Rutschmann wrote: > > Hi, > > > > sorry I haven't looked to the page for a while but > > PyNifti (aka python-nifti) and dini

med-imaging web status (was Re: opendicom)

2007-08-22 Thread Michael Hanke
lable via apt-get at > deb http://apsy.gse.uni-magdeburg.de etch main > > kudos to Michael Hanke > > So a bit more "green" for the debian-med/imaging web-page. The current status is documented on http://wiki.debian.org/DebianMedImaging I know I could have applied for

Re: Amide [Was: Report from Libre Software Meeting]

2007-07-18 Thread Michael Hanke
Hi, On Tue, Jul 17, 2007 at 11:18:38PM +0200, Andreas Tille wrote: > On Tue, 17 Jul 2007, Michael Hanke wrote: > >Anyway, we packaged volpack: > > > >http://svn.debian.org/wsvn/pkg-exppsy/volpack/?rev=0&sc=0 > > So would this been ready for sponsoring? If yes,

Re: Report from Libre Software Meeting

2007-07-17 Thread Michael Hanke
Anyway, we packaged volpack: http://svn.debian.org/wsvn/pkg-exppsy/volpack/?rev=0&sc=0 But unfortunately discovered that libfame is non-free. As none of us wanted to maintain another non-free package the whole process stopped at that point. Cheers, Michael -- GPG key: 1024D/3144BE0F Michael Hanke http://apsy.gse.uni-magdeburg.de/hanke ICQ: 48230050 signature.asc Description: Digital signature

Re: What is new in Debian-Med Etch ?

2007-04-15 Thread Michael Hanke
pkg-exppsy project on Alioth or at mentors. And yes I need sponsor(s), as for some reason I cannot dedicate enough time to my NM process (stuck at T&S part 1). -- GPG key: 1024D/3144BE0F Michael Hanke http://apsy.gse.uni-magdeburg.de/hanke ICQ: 48230050 -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]

Fwd: Re: VM image to promote Debian within the neuroimaging community

2007-04-15 Thread Michael Hanke
[ and mine was supposed to go to the list ;) ] - Forwarded message from Michael Hanke <[EMAIL PROTECTED]> - Date: Sun, 15 Apr 2007 09:57:48 +0200 From: Michael Hanke <[EMAIL PROTECTED]> To: Steffen Moeller <[EMAIL PROTECTED]> Subject: Re: VM image to promote

VM image to promote Debian within the neuroimaging community

2007-04-13 Thread Michael Hanke
e example installation of Debian etch. I'd be glad to hear your comments. I'd be especially interested in information if a similar project already exists and what I can do to get the highest benefit for the Debian project. Thanks in advance, Michael -- GPG key: 1024D/3144BE0

Progress on Debian Package for FSL

2007-04-05 Thread Michael Hanke
laints before I get some feedback that my decisions are reasonable. I hope I can attract someone this time ;) Thanks in advance. Cheers, Michael -- GPG key: 1024D/3144BE0F Michael Hanke http://apsy.gse.uni-magdeburg.de/hanke ICQ: 48230050 signature.asc Description: Digital signature

Re: Bug#409849: ITP: afni -- toolkit for analyzing and visualizing functional MRI data

2007-02-06 Thread Michael Hanke
Hi, On Tue, Feb 06, 2007 at 08:36:14AM +0100, Andreas Tille wrote: > On Mon, 5 Feb 2007, Michael Hanke wrote: > >AFNI is an environment for processing and displaying functional MRI data. > >It provides a complete analysis toolchain, including 3D cortical surface > >mode

Re: Package status in Debian-med website

2006-12-01 Thread Michael Hanke
Hi, On Thu, Nov 30, 2006 at 09:26:00PM +0100, Andreas Tille wrote: > On Thu, 30 Nov 2006, Michael Hanke wrote: > > >Thanks for pointing me to the translations, I completely ignored this. > >You're definitely right! > > Ah well, you young fools, you. ;-))

Re: Package status in Debian-med website

2006-11-30 Thread Michael Hanke
Hi, On Thu, Nov 30, 2006 at 11:28:25AM +0100, Andreas Tille wrote: > On Thu, 30 Nov 2006, Michael Hanke wrote: > While you are right that the really included contents has highest > priority, the not yet included stuff has its sense: > > * TODO list for people seeking

Re: Package status in Debian-med website

2006-11-30 Thread Michael Hanke
Hi, On Thu, Nov 30, 2006 at 10:10:38AM +0900, Charles Plessy wrote: > Le Wed, Nov 29, 2006 at 10:29:02PM +0100, Andreas Tille a écrit : > > On Wed, 29 Nov 2006, Michael Hanke wrote: > > > dinifti - Debian package not available > > > > > >This should be upd

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