Re: Request for Sponsorship: VeryFastTree - Parallelized and Optimized Version of FastTree

2023-09-12 Thread César Pomar
Hi, Done, the repository is ready. Best regards > > > * from lintian's automatic review, there are a couple of > > > warnings about the baseline specific executables caught > > > without manual pages: > > > > > > W: veryfasttree: no-manual-page [usr/bin/VeryFastTree-avx2] > > >

Re: Request for Sponsorship: VeryFastTree - Parallelized and Optimized Version of FastTree

2023-09-11 Thread César Pomar
Hi, > Hi César, > > César Pomar, on 2023-09-07: > > The latest version of VeryFastTree is now available > > in the Salsa repository. It should pass all Debian tests now. > > Thanks for your work on this, I'm open to proceed to an upload, > but I wan

Re: Request for Sponsorship: VeryFastTree - Parallelized and Optimized Version of FastTree

2023-09-07 Thread César Pomar
Hi Andreas, > Hi César, > > sorry for beeing a bit short but I'm in preparation of my DebConf > travel thus answering only where you directly addressed me. No problem at all. I just got back from vacation. > Am Mon, Sep 04, 2023 at 03:11:38PM +0200 schrieb César Pomar: >

Re: Request for Sponsorship: VeryFastTree - Parallelized and Optimized Version of FastTree

2023-09-04 Thread César Pomar
Hi, >Hi César, > >César Pomar, on 2023-07-28: >> I noticed that on https://tracker.debian.org/pkg/veryfasttree, they are >> testing the tool with 32-bit architectures, and the tests are failing. The >> tool is designed to leverage computing on 64-bit architectures, an

Re: Request for Sponsorship: VeryFastTree - Parallelized and Optimized Version of FastTree

2023-07-28 Thread César Pomar
Hi Andreas, I noticed that on https://tracker.debian.org/pkg/veryfasttree, they are testing the tool with 32-bit architectures, and the tests are failing. The tool is designed to leverage computing on 64-bit architectures, and the memory limit of 32 bits drastically reduces the size of data that c

Re: [Help] Could someone please have a look at gmap build failure

2023-07-19 Thread César Pomar
73&raw=0 > > Note: /<>/build/src/gmap.nosimd does not exist. For faster > speed, may want to compile package on an non-SIMD machine > Error: appropriate GMAP version not found > > But otherwise the build suceeds > > On Mon, Jul 17, 2023 at 12:57 PM César Pomar > w

Re: [Help] Could someone please have a look at gmap build failure

2023-07-17 Thread César Pomar
Hi Andreas, It's a pleasure to be involved. If there's anything pending that I can assist with, please let me know. Best regards, César El jue, 13 jul 2023 a las 14:16, Andreas Tille () escribió: > Hi César, > > Am Thu, Jul 13, 2023 at 09:49:03AM +0200 schrieb César Pomar:

Re: [Help] Could someone please have a look at gmap build failure

2023-07-13 Thread César Pomar
Hi, I think the same way. The code has multiple levels of vector extensions: SSE2, SSE3, AVX... AVX512. The code has macros to define the data types according to the selected extension. It's very possible that they focused on SSE3 or AVX (which are already the minimum supported by any machine) and

Re: Request for Sponsorship: VeryFastTree - Parallelized and Optimized Version of FastTree

2023-07-10 Thread César Pomar
Hi Andreas, Copyright ready Kind regards, César El lun, 10 jul 2023 a las 16:14, Andreas Tille () escribió: > Hi César, > > Am Mon, Jul 10, 2023 at 12:50:13PM +0200 schrieb César Pomar: > > It appears that the following change needs to be made: "mention Stephane > &

Re: Request for Sponsorship: VeryFastTree - Parallelized and Optimized Version of FastTree

2023-07-10 Thread César Pomar
Hi, It appears that the following change needs to be made: "mention Stephane Guindon in your debian/copyright". It seems like a straightforward change. Shouldn't it also be included in the copyright of FastTree? Best, César

Re: Request for Sponsorship: VeryFastTree - Parallelized and Optimized Version of FastTree

2023-07-06 Thread César Pomar
Hi, fixed and pushed to repository. César El jue, 6 jul 2023 a las 17:56, Nilesh Patra () escribió: > On Thu, Jul 06, 2023 at 05:23:04PM +0200, César Pomar wrote: > > > This line > > > > > > > > > https://salsa.debian.org/med-team/veryfasttree/-/commit/7

Re: Request for Sponsorship: VeryFastTree - Parallelized and Optimized Version of FastTree

2023-07-06 Thread César Pomar
Hi, > On Thu, Jul 06, 2023 at 04:53:11PM +0200, César Pomar wrote: > > Thank Nilesh for the corrections. I have taken them into account in the > > last implementation. > > This line > > https://salsa.debian.org/med-team/veryfasttree/-/commit/71dd640efa995

Re: Request for Sponsorship: VeryFastTree - Parallelized and Optimized Version of FastTree

2023-07-06 Thread César Pomar
Hi, > please also check the very detailed answer of Nilesh. Thank Nilesh for the corrections. I have taken them into account in the last implementation. > Am Wed, Jul 05, 2023 at 07:52:07PM + schrieb César Pomar: > > > > More than hardware optimizations, I mean that it may

Re: Request for Sponsorship: VeryFastTree - Parallelized and Optimized Version of FastTree

2023-07-05 Thread César Pomar
> > Thanks Nilesh. I have created a new implementation based on your > > guidelines. > > > > I am still considering whether it would be necessary to include all > > possible > > compilations. Perhaps with only SSE2, AVX2, and AVX512F, it would be > > sufficient, > > or even just SSE2 and AVX2. What

Re: Request for Sponsorship: VeryFastTree - Parallelized and Optimized Version of FastTree

2023-07-05 Thread César Pomar
Thanks Nilesh. I have created a new implementation based on your guidelines. I am still considering whether it would be necessary to include all possible compilations. Perhaps with only SSE2, AVX2, and AVX512F, it would be sufficient, or even just SSE2 and AVX2. What do you think, Andreas? The on

Re: Request for Sponsorship: VeryFastTree - Parallelized and Optimized Version of FastTree

2023-07-04 Thread César Pomar
Dear Étienne and Andreas > > Am Tue, Jul 04, 2023 at 04:19:45PM +0200 schrieb César Pomar: > > > > I did not checked (yet) but you might like to have a look into > > > > SIMDEverywhere[3] > > > > > > Thank you, but I meant that I was enabling AMD6

Re: Request for Sponsorship: VeryFastTree - Parallelized and Optimized Version of FastTree

2023-07-04 Thread César Pomar
Hi Andreas > > I have already updated the GitHub repository. I updated the xxhash and > > robin-map libraries to their latest versions and adjusted the source code > > to avoid issues. > > Very good. This kind of cooperation with upstream is IMHO a very > valuable (and perfectly intended) effect

Re: Request for Sponsorship: VeryFastTree - Parallelized and Optimized Version of FastTree

2023-07-03 Thread César Pomar
Jun 30, 2023 at 04:16:05PM +0200 schrieb César Pomar: > > > > That will be simple. VeryFastTree has the same interface as FastTree. The > > test > > that exists for FastTree in its package should be valid for VeryFastTree > as > > well. > > > > https

Re: Re: Request for Sponsorship: VeryFastTree - Parallelized and Optimized Version of FastTree

2023-06-30 Thread César Pomar
Hi, Since my institutional email is not working, I will try using my personal email, and if it works, I will continue using it. > Hi, > > for some reason I do not know Cesar's mail did not come through to the > list. I'm doing full quotes in my response. Unfortunately the quoting > is badly for