Re: Asking a review of the htsjdk package

2015-09-07 Thread Emmanuel Bourg
Le 07/09/2015 00:56, Vincent Danjean a écrit : > So, I created a new package (source package 'htsjdk') that is > currently in the NEW queue. That said, I would be very pleased if > someone from the java team can give a look at the package. I'm not > very familiar with java packaging. Any comment

Re: New guy with some questions

2015-09-07 Thread Emmanuel Bourg
Le 06/09/2015 04:34, dean a écrit : > I am not asking for the community to work for me, I am happy to do the > legwork and get involved but I will need some advice, a push in the > right direction and possibly some hand holding. Hi Dean, Note that you can join us on IRC #debian-java, we'll be ha

Re: Asking a review of the htsjdk package

2015-09-07 Thread Vincent Danjean
On 07/09/2015 09:00, Emmanuel Bourg wrote: > Le 07/09/2015 00:56, Vincent Danjean a écrit : > >> So, I created a new package (source package 'htsjdk') that is >> currently in the NEW queue. That said, I would be very pleased if >> someone from the java team can give a look at the package. I'm no

Re: Asking a review of the htsjdk package

2015-09-07 Thread Andreas Tille
Hi Vincent, On Mon, Sep 07, 2015 at 12:56:42AM +0200, Vincent Danjean wrote: > I'm in the process to package the new picard-tools upstream. > It is done within the Debian Med packaging team but it is a > java program. > The new upstream version modifies a lot its layout. In particular, > a big

Re: Asking a review of the htsjdk package

2015-09-07 Thread Vincent Danjean
On 07/09/2015 09:57, Andreas Tille wrote: > Hi Vincent, > > On Mon, Sep 07, 2015 at 12:56:42AM +0200, Vincent Danjean wrote: >> I'm in the process to package the new picard-tools upstream. >> It is done within the Debian Med packaging team but it is a >> java program. >> The new upstream versi

Re: New guy with some questions

2015-09-07 Thread dean
On 07/09/15 00:24, Markus Koschany wrote: > Am 06.09.2015 um 04:34 schrieb dean: > > Hello dean, > > welcome to Debian Java. > Thank you. > Filing a wishlist bug report against bouncycastle and setting yourself > as the owner of that bug is a good way to avoid double work and to > inform people

Re: New guy with some questions

2015-09-07 Thread dean
On 07/09/15 17:02, Emmanuel Bourg wrote: > Le 06/09/2015 04:34, dean a écrit : > > Hi Dean, > > Note that you can join us on IRC #debian-java, we'll be happy to guide > you through the process of creating a package. Ive got to say the debian-java list is the most friendly list I have ever joined

Re: Asking a review of the htsjdk package

2015-09-07 Thread Emmanuel Bourg
Le 07/09/2015 09:57, Andreas Tille a écrit : > 2. I *personally* would use libhtsjdk-java also as source > package name. Since Emmanuel did not mentioned this it is > possibly no declared pkg-java policy so feel free to ignore > this hint. There is no consensus on this matter. I

Re: New guy with some questions

2015-09-07 Thread tony mancill
On 09/07/2015 04:19 AM, dean wrote: > On 07/09/15 00:24, Markus Koschany wrote: >> We always build the javadoc from source, so it is a matter of getting >> debian/rules right. You could try to rebuild the package and figure out >> why the documentation is missing. I can see there are different inst

Asking help for the picard-tools package

2015-09-07 Thread Vincent Danjean
Hi, After the htsjdk package, I tried to update the picard-tools package itself. Sources can be obtained with git clone git://anonscm.debian.org/debian-med/picard-tools.git Of course, to compile it, you need the previous libhtsjdk-java package. You can find a compiled version in my own r