Hi, After the htsjdk package, I tried to update the picard-tools package itself.
Sources can be obtained with git clone git://anonscm.debian.org/debian-med/picard-tools.git Of course, to compile it, you need the previous libhtsjdk-java package. You can find a compiled version in my own repo (see my signature for the APT repo or manually download it from https://people.debian.org/~vdanjean/debian/pool/main/libh/libhtsjdk-java/ ) I'm annoyed with the current package: the tests fail when the sources are in a directory containing a '+'. And, due to the repack and the +dfsg suffix, my sbuilder put the source into a «BUILDDIR»/picard-tools-1.138+dfsg.1 directory. I manually reproduce the problem: "dpkg-buildpackage -us -uc" works perfectly when invoked from a 'picard-tools' directory, but fails during the tests if I rename the directory into 'picard-tools-1.138+dfsg.1'. In the log, we can found: [testng] WARNING 2015-09-07 23:25:58 ClassFinder could not read entriesjava.io.FileNotFoundException: /home/vdanjean/«BUILDDIR»/picard-tools-1.138 dfsg.1/classes/picard (No such file or directory) The '+' as been replaced by a ' ' Is this a known issue with java tools? Is there a workaround? Google did not show me anything relevant. Regards, Vincent -- Vincent Danjean GPG key ID 0xD17897FA vdanj...@debian.org GPG key fingerprint: 621E 3509 654D D77C 43F5 CA4A F6AE F2AF D178 97FA Unofficial pkgs: http://moais.imag.fr/membres/vincent.danjean/deb.html APT repo: deb http://people.debian.org/~vdanjean/debian unstable main
