Bug#609038: ITP: biomaj -- a biological databank update and processing tool

2011-01-05 Thread Olivier Sallou
Package: biomaj Version: 1.1.0 Severity: wishlist I want to package the Biomaj tool (http://biomaj.genouest.org) for Debian. The tool is already on production on several servers worldwide. -- System Information: Debian Release: squeeze/sid APT prefers lucid-updates APT policy: (500, 'lucid-u

[VAC] 11 -> 23 July

2014-07-09 Thread olivier sallou
Hi, I won't be available/reachable during this period for package maintenance. In case of issue, the Debian Med team can manage my packages, thank you for forwarding the the debian-med mailng list. Olivier

Bug#756291: (no subject)

2014-07-28 Thread Olivier Sallou
Subject: ITP: prodigal -- microbial (bacterial and archaeal) gene finding program Package: wnpp Owner: Olivier Sallou Severity: wishlist * Package name: prodigal Version : 2.60 Upstream Author : Doug Hyatt * URL : http://prodigal.ornl.gov/ * License : GPL

Packaging of web apps: bower, yeoman...

2014-11-08 Thread olivier sallou
Hi, I'd like to know if some developper already packaged web apps using bower/yeoman. Those tools are more and more popular in web development to get web related libraries and , with Grunt, concatenate/minify/obscorate/... used libraries. The issue is, like npm, maven or other tools, they download

is something wrong with cron.d ?

2012-04-12 Thread Olivier Sallou
Hi, I have added a cron task to my package via the package xxx.cron file. (I am using sid) However, it never gets executed (not exactly true, it happened to occur once...) In my syslog file I can see: Apr 12 13:04:01 VM-247 /usr/sbin/cron[2999]: (*system*xgrid) RELOAD (/etc/cron.d/xgrid) Apr

Re: is something wrong with cron.d ?

2012-04-12 Thread Olivier Sallou
STUPID ME!!! I have spent hours looking for bugs, issues, looking at files not seeing the syntax error "0/5"... Sorry for the noise... Olivier Le 4/12/12 1:52 PM, Olivier Sallou a écrit : > Hi, > I have added a cron task to my package via the package xxx.cron file. (

debootstrap loading both libept1 AND libept1.4.12, .. and fails!

2012-04-17 Thread olivier sallou
Hi, I cannot get debootstrap working anymore in sid since libept update. There is an open bug (#472704) for this but if someone has an idea of what is going on to help the debug A recent upload of libept delivered binary libept1.4.12 instead of libept1 (source release 1.0.6 now). But when deb

Re: debootstrap loading both libept1 AND libept1.4.12, .. and fails!

2012-04-17 Thread olivier sallou
2012/4/17 olivier sallou > Hi, > I cannot get debootstrap working anymore in sid since libept update. > There is an open bug (#472704) for this but if someone has an idea of what > is going on to help the debug > > A recent upload of libept delivered binary libept1.4.12

Re: debootstrap loading both libept1 AND libept1.4.12, .. and fails!

2012-04-18 Thread olivier sallou
2012/4/18 Mike Gabriel > Package: libept1.4.12 > Version: 1.0.6.1 > Severity: Important > > Hi Oliver, hi Enrico, hi all, > > > On Di 17 Apr 2012 17:29:53 CEST olivier sallou wrote: > > 2012/4/17 olivier sallou >> >> Hi, >>> I cannot get deb

Bug#674265: ITP: biojava3 -- Java API to develop tools for bioinformatics research rewrote from biojava1

2012-05-24 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: biojava3 Version : 3.0.4 Upstream Author : BioJava team * URL : http://www.biojava.org/ * License : LGPL Programming Lang: Java Description : Java API to develop tools for

Bug#674269: ITP: libforester-java -- library for phylogenomics and evolutionary biology research

2012-05-24 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: forester Version : 0.955 * URL : http://code.google.com/p/forester/ * License : LGPL Programming Lang: Java Description : library for phylogenomics and evolutionary biology research

apache 2.4 transition bugs

2012-05-24 Thread Olivier Sallou
Hi, as Apache 2.4 transition has been delayed, should not created bugs, set with Important severity be lowered ? or closed and reopen when transition will occur? I have several packages impacted. Thanks Olivier -- gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D

Re: Packaging on GitHub ?

2012-05-26 Thread olivier sallou
Le 27 mai 2012 03:12, "Jon Bernard" a écrit : > > * Charles Plessy wrote: > > Hello everybody, > > > > for one of the packages maintained by the pkg-eucalyptus team (euca2ools), the > > upstream source moved to GitHub, and we would like to try to maintain the > > Debian package there as well. > >

Bug#678373: ITP: logol -- Pattern matching tool for biological sequences

2012-06-21 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: logol Version : 1.5.0 Upstream Author : Olivier Sallou * URL : http://logol.genouest.org * License : CeCILL Programming Lang: Java, Prolog Description : Pattern matching tool for

Bug#683291: ITP: soapdenovo -- short-read assembly method that can build a de novo draft assembly for the human-sized genomes

2012-07-30 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: soapdenovo Version : 1.0.5 Upstream Author : BGI-Shenzhen * URL : http://soap.genomics.org.cn/soapdenovo.html * License : GPL3+ Programming Lang: C Description : short-read assembly

Re: Enabling uscan to simply remove files from upstream source

2012-08-21 Thread olivier sallou
2012/8/21 Andreas Tille > Hi, > > third summary of the proposal > > 1. The new field Files-Excluded in debian/copyright contains a space > separated list of globs (as used by find and for specifying file > lists in machine readable debian/control files). The deletion > process will l

Bug#686077: ITP: libsnappy1.0.3-java -- Fast Java compressor/decompressor, port of Snappy

2012-08-28 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: libsnappy1.0.3-java Version : 1.0.3-rc3 Upstream Author : Xerial.org * URL : https://code.google.com/p/snappy-java/downloads/list?can=4&q=&colspec=Filename+Summary+Uploaded+ReleaseD

Re: On accepting pre-generated doc from upstream

2013-06-06 Thread olivier sallou
2013/6/7 Lisandro Damián Nicanor Pérez Meyer > Hi everyone. First of all, I'm cross-posting this between legal and devel > because I really don't know to which of them belongs (or maybe it does in > both). > > The issue is this: Qt 5 has grown so large (850+MB unpacked in the single- > source tar

overriding udev rules

2013-08-20 Thread olivier sallou
hi, I need for a package to override some udev standard rules. If I put an identical rule name in /etc/udev/rules.d, I know it overrides the one in /lib/udev/rules.d However, lintian raises an error if I put an udev rule in /etc instead of /lib. And if I try to put the file in /lib, it fails at

Re: overriding udev rules

2013-08-20 Thread olivier sallou
2013/8/20 Michael Biebl > Am 20.08.2013 10:39, schrieb olivier sallou: > > hi, > > I need for a package to override some udev standard rules. > > > > If I put an identical rule name in /etc/udev/rules.d, I know it overrides > > the one in /lib/udev/rules.d >

Re: overriding udev rules

2013-08-20 Thread olivier sallou
2013/8/20 olivier sallou > > > > 2013/8/20 Michael Biebl > >> Am 20.08.2013 10:39, schrieb olivier sallou: >> > hi, >> > I need for a package to override some udev standard rules. >> > >> > If I put an identical rule name in /etc/udev/

Fwd: Re: overriding udev rules

2013-08-20 Thread olivier sallou
Ccing the list -- Message transféré -- De : "olivier sallou" Date : 20 août 2013 22:27 Objet : Re: overriding udev rules À : "Thomas Goirand" Le 20 août 2013 22:18, "Thomas Goirand" a écrit : > > On 08/20/2013 07:02 PM, olivier sallou

Re: overriding udev rules

2013-08-21 Thread olivier sallou
2013/8/21 Peter Palfrader > On Tue, 20 Aug 2013, Thomas Goirand wrote: > > > I'd be happy to find a correct and clean way to do this, because I also > > need to do it, and it seems to be a fairly common use case. I currently > > only delete the 75-persistent-net-generator.rules file (which I know

Re: overriding udev rules

2013-08-22 Thread olivier sallou
I think I gonna simply skip the udev rules overriding, it will be up to the user to do the cleaning if he wants to do cloning etc... as done in cloud-init package, waiting for easier udev management from package side. Thanks to all for your advises. quoting previous... -- > > gpg key id: 4096R

Bug#644136: ITP: ruby-text -- collection of text match and analysis algorithms

2011-10-03 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: ruby-text Version : 1.1.2 Upstream Author : Paul Battley, Michael Neumann, Tim Fletcher * URL : https://rubygems.org/gems/Text * License : GPL Programming Lang: Ruby Description

Bug#644137: ITP: ruby-cassiopee -- provide methods to search exact match or approximate matches with Hamming or edit distance

2011-10-03 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: ruby-cassiopee Version : 0.1.8 Upstream Author : Olivier Sallou * URL : https://rubygems.org/gems/cassiopee * License : GPL Programming Lang: Ruby Description : provide methods to

Build error form Ubuntu regarding xz compression

2011-10-19 Thread olivier sallou
Hi, I received an email error from Ubuntu regarding build of a package (extracted from debian): Rejected: Require Pre-Depends: dpkg (>= 1.15.6) when using xz compression. Require Pre-Depends: dpkg (>= 1.15.6) when using xz compression. Package indeed uses xz compression, but do you know what I s

Re: Build error form Ubuntu regarding xz compression

2011-10-19 Thread olivier sallou
Thanks for clarification 2011/10/19 Colin Watson > On Wed, Oct 19, 2011 at 02:09:47PM +0200, olivier sallou wrote: > > I received an email error from Ubuntu regarding build of a package > > (extracted from debian): > > I'm sorry you received this error; this i

Bug#647416: ITP: libbio-chado-schema-perl -- object-relational mapping layer for use with the GMOD Chado database schema

2011-11-02 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: libbio-chado-schema-perl Version : 0.09010 Upstream Author : Robert Bruels * URL : http://search.cpan.org/~rbuels/Bio-Chado-Schema/lib/Bio/Chado/Schema.pm * License : Artistic or GPL-1

Bug#647417: ITP: libdbix-class-tree-nestedset-perl -- Manage trees of data using the nested set model

2011-11-02 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: libdbix-class-tree-nestedset-perl Version : 0.10 Upstream Author : Ian Docherty * URL : http://search.cpan.org/~icydee/DBIx-Class-Tree-NestedSet-0.10/ * License : Artistic or GPL-1

Re: Want to become a DM and co-maintainer

2011-11-15 Thread olivier sallou
2011/11/12 Svante Signell > Hi, > > Where/how to apply to become a co-maintainer and a maintainer? The > packages I'm interested into start with are: gnuradio and octave. > Additionally, I have not found any package for USRP yet. > At first, you will have to maintain package via a sponsor or a t

Bug#652031: ITP: clustalo -- Clustal Omega is the latest addition to the Clustal family

2011-12-14 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: clustalo Version : 1.0.3 Upstream Author : clust...@ucd.ie * URL : http://www.clustal.org/omega/ * License : GPL Programming Lang: C Description : Clustal Omega is the latest

Bug#654603: ITP: gassst -- Global Alignment Short Sequence Search Tool

2012-01-04 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: gassst Version : 1.28 Upstream Author : Dominique Lavanier * URL : http://www.irisa.fr/symbiose/projects/gassst/ * License : CeCILL v2 Programming Lang: C++ Description : Global

Bug#657184: ITP: j2f -- Java Application Programming Interfaces (APIs) to numerical libraries originally written in Fortran

2012-01-24 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: j2f Version : 0.8.1 Upstream Author : Keith Seymour (seym...@cs.utk.edu) * URL : http://sourceforge.net/projects/f2j/ * License : GPL Programming Lang: C Description : Java

nm.debian.org web site not responding

2012-02-22 Thread olivier sallou
Hi, the web site https://nm.debian.org/nmlist.php has a forbidden access error for a few days. Do you know who we should contact ? Thanks Olivier -- gpg key id: 4096R/326D8438 (pgp.mit.edu) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438

A few questions from a new DD

2012-02-29 Thread olivier sallou
Hi, I got my DD status a few days ago. I have 2 questions: 1) How can I send email using my @debian.org as origin ? 2) I cannot login to debian servers (tried people.debian.org), I have a permission denied. My SSH key is not yet set, so I cannot login using it. I expected to be prompted for passwo

Re: A few questions from a new DD

2012-02-29 Thread olivier sallou
2012/2/29 Jonathan Wiltshire > On 2012-02-29 09:26, olivier sallou wrote: > >> Hi, >> I got my DD status a few days ago. I have 2 questions: >> >> 1) How can I send email using my @debian.org [1] as origin ? >> > > Just set your From header accordingly

Re: A few questions from a new DD

2012-02-29 Thread olivier sallou
2012/2/29 Andreas Tille > Hi, > > On Wed, Feb 29, 2012 at 10:56:28AM +0100, Alexander Reichle-Schmehl wrote: > > > I already logged to web interface to update my profile. > > > I do not see however any SSH key attribute in the web interface, did I > > > miss something?. I know that it can be done

Re: Bug#662513: RM: emboss/6.3.1-6

2012-03-05 Thread Olivier Sallou
have a look if you want to. Code is in SVN of Java team? Olivier > Lastly, the request I made was to remove emboss from Testing, but this is not > a > request for removal from Debian, and I really aim at shipping an up-to-date > EMBOSS in Wheezy. > > Cheers, > -- Olivier Sa

Bug#665341: ITP: libjlapack-java -- LAPACK numerical subroutines translated from Fortran to Java

2012-03-23 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: libjlapack-java Version : 0.8 Upstream Author : Keith Seymour * URL : http://icl.cs.utk.edu/f2j/ * License : BSD Programming Lang: Fortran, Java Description : LAPACK numerical

Bug#665343: ITP: libnetlib-java -- collection of mission-critical software components for linear algebra system translated from Fortran to Java

2012-03-23 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: libnetlib-java Version : 0.9.3 Upstream Author : Sam Halliday * URL : http://code.google.com/p/netlib-java * License : BSD Programming Lang: Fortran, Java Description : collection

Re: Discarding uploaded binary packages

2012-10-15 Thread olivier sallou
Le 16 oct. 2012 04:59, "Michael Gilbert" a écrit : > > I know this subject has been discussed on and off in the past, but > there's new evidence that it's simply the right thing to do. > > Due to changes in upstream's build system, isc-dhcp recently started > including build system paths in dhclie

Bug#700859: ITP: mobyle-tutorials -- Tutorial descriptors for the mobyle package

2013-02-18 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: mobyle-tutorials Version : 1.5.0 Upstream Author : Mobyle team * URL : ftp://ftp.pasteur.fr/pub/GenSoft/projects/mobyle/ * License : LGPL-2+ Programming Lang: XML Description

Re: Generators for debian/* files?

2013-04-05 Thread olivier sallou
dh-make-perl indeed for Perl CPAN packages. dh-make for base packages... Olivier 2013/4/5 Thomas Koch > Hi, > > debian-java has the tool "mh_make" that generates debian packages from > maven > projects. There's some java code in there that produces debian/* files: > rules, > copyright, watch,

Bug#705128: ITP: libcofoja-java -- Java framework with annotation processing to provide runtime checkings

2013-04-10 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: libcofoja-java Version : 1.0~r139 Upstream Author : Google Inc * URL : https://code.google.com/p/cofoja/ * License : LGPL Programming Lang: Java Description : Java framework with

Re: [Debian-med-packaging] Question about proper archive area for packages that require big data for operation

2013-04-23 Thread Olivier Sallou
Yet, by all means, I > would want the tool to be part of the distribution. > > [5] http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0028766 > > Thank you for your opinion and advice. > > Best regards, > Laszlo > > ___

Re: [Debian-med-packaging] Question about proper archive area for packages that require big data for operation

2013-04-24 Thread Olivier Sallou
bian.org/wiki/projects/data/ > [2] > http://lists.alioth.debian.org/pipermail/debian-med-packaging/2013-April/019320.html > > Laszlo > > ___ > Debian-med-packaging mailing list > debian-med-packag...@lists.alioth.debian.org > http://lists.

issue with svn repo?

2013-11-11 Thread olivier sallou
Hi, are you experimenting issues with svn access to debian repo (svn and anonsvn) ? I can't connect anymore and when trying to browse the code, I have access errors http://anonscm.debian.org/viewvc/debian-med/trunk Olivier -- gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint =

Bug#732990: ITP: readseq2 -- readseq2 is a rewrite of readseq converter

2013-12-23 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: readseq2 Version : 2.1.30 Upstream Author : D. Gilbert * URL : http://iubio.bio.indiana.edu/soft/molbio/readseq/java/ * License : Public Domain Programming Lang: Java Description

Bug#735158: ITP: minia -- short-read assembler

2014-01-13 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: minia Version : 1.6067 Upstream Author : Rayan * URL : http://minia.genouest.org * License : CeCILL Programming Lang: C Description : short-read assembler Minia is a short-read

Re: Bug#732878: Add MariaDB as an alternative dependency

2014-01-17 Thread olivier sallou
2014/1/17 Otto Kekäläinen > 2013/12/30 Otto Kekäläinen : > > We discussed this on the pkg-maint-mysql list and the recommended policy > is now: > > > > All packages that at the moment depend directly on mysql-client should > > instead have something like: > > > > Depends: the-one-they-tested-with

Bug#737098: ITP: discosnp -- discovering Single Nucleotide Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation Sequencers

2014-01-30 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: discosnp Version : 1.0.1 Upstream Author : INRIA * URL : http://colibread.inria.fr/discosnp/ * License : CeCILL Programming Lang: C Description : discovering Single Nucleotide

Bug#737099: ITP: mapsembler2 -- bioinformatics targeted assembly software

2014-01-30 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: mapsembler2 Version : 2.0.5 Upstream Author : INRIA * URL : https://colibread.inria.fr/mapsembler2/ * License : CeCILL Programming Lang: C Description : bioinformatics targeted

Fwd: Microsoft Azure provider available in bootstrap-vz

2014-04-08 Thread olivier sallou
-- Message transféré -- De : "olivier sallou" Date : 8 avr. 2014 09:05 Objet : Microsoft Azure provider available in bootstrap-vz À : "debian-cloud" Cc : Hi, I have just finished the provider for Microsoft Azure on bootstrap-vz, in the development branch fo

problem with web site http://packages.debian.org/

2011-07-12 Thread olivier sallou
Hi, there is an issue with one of my packages with the displayed description. http://packages.debian.org/sid/biomaj It displays: Binary utilities supporting TI's MSP430 targetsPackage: biomaj (1.1.0-3) The programs in this package are used to manipulate binary and object files that may

Re: Providing official virtualisation images of Debian

2011-07-29 Thread olivier sallou
Debian live provide has the possibility to generate raw images with custom configuration. Only problem here is it is to generate livecd instead of a ready to run image. Adding this possiblity would provide VM for Debian but also Debian users to create their own Debian customized VM. Raw format can

Re: Providing official virtualisation images of Debian

2011-07-31 Thread olivier sallou
Let's not just forget that Amazon EC2 AMI is a nice thing to provide, but interface to get ssh-keys etc... (just look at ip used to get meta data) is propriatory and will not work with other cloud softwares (public or private, such as open nebula/open stack). Only EC2 interface is shared to manage

Fwd: Re: BLAST+ speed & build issues

2011-08-04 Thread Olivier Sallou
biansid:/tmp/ncbi-blast-2.2.25+-src/debian/ncbi-blast+/usr/bin$ time bash -c 'for (( c=1; c<=50; c++ )) ; do blastx -h > /dev/null ; done' real0m8.002s user0m4.200s sys0m3.856s ---- Message original Sujet: Re: BLAST+ speed & build issues Date de re

Re: Fwd: Re: BLAST+ speed & build issues

2011-08-04 Thread olivier sallou
Linking against "needed" lib is quite difficult (would need to be done on upstream), package is rather complex regarding compilation. And each solution has its pros and cons I think we will have to discuss on validity to provide static builds ( takes a lot of space on package vs perf loss) Th

Bug#637109: ITP: pycaptcha -- collection of Python modules implementing CAPTCHAs

2011-08-08 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: pycaptcha Version : 2.4 Upstream Author : Micah Dowty * URL : http://pypi.python.org/pypi/PyCAPTCHA/0.4 * License : MIT Programming Lang: Python Description : collection of

Bug#637230: ITP: mobyle -- Mobyle is a wbe portal and framework to provide web interfaces to command-line tools. It is designed though not limited for bioinfomatics.

2011-08-09 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: mobyle Version : 1.0.0 Upstream Author : Herve Menager * URL : https://projets.pasteur.fr/wiki/mobyle/download * License : GPL Programming Lang: Python Description : Mobyle is a

how to debug test build issues form Debian servers

2011-08-25 Thread olivier sallou
Hi, I have a package that fails some tests on a few architectures. Looking at logs from those servers, it seems that it is quite random (not always same arch, or same tests), could be due to some timeouts in tests etc... I am not upstream author, impacted tests are not easy to debug. And log show n

Bug#639868: ITP: chado -- Chado is a relational database schema that underlies many GMOD installations.

2011-08-31 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: chado Version : 1.11 Upstream Author : GMOD * URL : http://gmod.org/wiki/Chado_-_Getting_Started * License : Artistic License 2.0 Programming Lang: Perl,SQL Description : Chado is

load of apache module for a package

2011-09-19 Thread olivier sallou
Hi, I need some apache modules for a package. Should I use a2enmod in postinst script, or, is there any debhelper/deb file way to do it? Thanks Olivier

Re: Javascript trigger design

2014-11-27 Thread olivier sallou
Le Fri Nov 28 2014 at 01:55:26, Tomas Pospisek a écrit : > Am 28.11.2014 um 00:04 schrieb Thomas Goirand: > > Hi, > > > > Web application have evolved into monsters that needs lots of > > javascript. It's very common that these javascript applications are > > collecting all the .js library they u

Any way to apply patch on some archs only?

2015-01-28 Thread olivier sallou
Hi I d like to know if it is posdible to apply a patch on some archs only. I have some FTBS on some archs for a package. I have a patch but I d like to apply it only on failings archs and keep original upstream code for others. Patches can indeed fix an issue but be less performant/optimal... I c

Re: Any way to apply patch on some archs only?

2015-01-29 Thread olivier sallou
nly ease some cases. > > On Thu, Jan 29, 2015 at 5:26 PM, olivier sallou > wrote: > >> Hi >> I d like to know if it is posdible to apply a patch on some archs only. >> I have some FTBS on some archs for a package. I have a patch but I d like >> to apply it onl

Re: Any way to apply patch on some archs only?

2015-01-29 Thread olivier sallou
Le Thu Jan 29 2015 at 9:11:08 AM, Raphael Hertzog a écrit : > Hi, > > On Thu, 29 Jan 2015, olivier sallou wrote: > > I d like to know if it is posdible to apply a patch on some archs only. > > I have some FTBS on some archs for a package. I have a patch but I d like &g

Re: Any way to apply patch on some archs only?

2015-01-29 Thread olivier sallou
Le Thu Jan 29 2015 at 9:58:18 AM, Paul Wise a écrit : > On Thu, Jan 29, 2015 at 4:16 PM, olivier sallou wrote: > > > In my current case, I can apply on all archs if needed, but I wondered if > > there was an easy way, seems not... :-( > > Please post some details of the

Fwd: Any way to apply patch on some archs only?

2015-01-29 Thread olivier sallou
Forgot to CC the list -- Forwarded message - From: olivier sallou Date: jeu. 29 janv. 2015 15:20 Subject: Re: Any way to apply patch on some archs only? To: Ian Jackson Sorry for quoting, sent from my phone... Yes this is this bug. Upstream will add conditions in code (ifdef

Re: what's the difference between [s/i/m/l/k/n] ?

2015-02-28 Thread olivier sallou
Sorry for quoting, sent from my phone. This impacts d/control only to use a different template. Do not forget it is a helper only. s/m... will only propose a different control schema/fields autofilled according to your choice. Olivier Le dim. 1 mars 2015 07:12, lumin a écrit : Hi guys, When

Bug#783833: ITP: python-obitools -- set of programs specifically designed for analyzing NGS data in a DNA metabarcoding contex

2015-04-30 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: python-obitools Version : 1.1.16 Upstream Author : Eric Coissac * URL : http://metabarcoding.org//obitools/ * License : CeCILL-V2 Programming Lang: Python Description : set of

Re: Bug#783833: ITP: python-obitools -- set of programs specifically designed for analyzing NGS data in a DNA metabarcoding contex

2015-04-30 Thread olivier sallou
Le jeu. 30 avr. 2015 à 17:42, Scott Kitterman a écrit : > On Thursday, April 30, 2015 05:13:03 PM Olivier Sallou wrote: > > Package: wnpp > > Severity: wishlist > > Owner: Olivier Sallou > > > > * Package name: python-obitools > > Version

Re: Bug#783833: ITP: python-obitools -- set of programs specifically designed for analyzing NGS data in a DNA metabarcoding contex

2015-04-30 Thread olivier sallou
Le jeu. 30 avr. 2015 à 23:57, Ben Hutchings a écrit : > On Thu, 2015-04-30 at 16:23 +0000, olivier sallou wrote: > [...] > > > Nope, not yet. However, as I discussed with one guy of the team some > > time ago, I do not think there is any plan to go to python3. > > Th

Bug#795865: ITP: bio-rainbow -- RAD-seq related clustering and de novo assembly

2015-08-17 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: bio-rainbow Version : 2.4.0 Upstream Author : Jue Ruan * URL : http://sourceforge.net/projects/bio-rainbow/ * License : GPL Programming Lang: C, Perl Description : RAD-seq related

Bug#796289: ITP: python-eta -- python module to generate progress bar for CLI

2015-08-20 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: python-eta Version : 0.9.7 Upstream Author : Marcus Breese * URL : https://github.com/mbreese/eta * License : BSD Programming Lang: Python Description : python module to generate

Bug#796363: ITP: libsis-base-java -- supplies some utility classes needed for libraries like sis-jhdf5

2015-08-21 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: libsis-base-java Version : 14.12.0 Upstream Author : ETH Zuerich, CISD * URL : https://wiki-bsse.ethz.ch/display/JHDF5/Download+Page * License : Apache Programming Lang: C, Java

Bug#796390: ITP: libsis-jhdf5-java -- HDF library for Java

2015-08-21 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: libsis-jhdf5-java Version : 14.12.1 Upstream Author : ETH Zuerich CISD * URL : http://svncisd.ethz.ch/repos/cisd/jhdf5/tags/release/ * License : Apache Programming Lang: C, Java

Bug#796487: ITP: repeatmasker-recon -- indentification of repeat families from biological sequences

2015-08-21 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: repeatmasker-recon Version : 1.08 Upstream Author : Institute for Systems Biology * URL : http://www.repeatmasker.org/ * License : GPL Programming Lang: C, Perl Description

Re: Please help me to create Debian package

2019-07-04 Thread olivier sallou
Le jeu. 4 juil. 2019 à 18:31, Mindaugas Celiesius a écrit : > > > > Hi, I am working on a project named Osdag. It is open-source software > for the design of steel structures. I'm trying to create a Debian package > for it and planning to add to Debian package repository. It would be a > great he

Re: Please help me to create Debian package

2019-07-05 Thread olivier sallou
Le ven. 5 juil. 2019 à 22:24, himanshu Singh a écrit : > Thanks, > There is a small problem I'm facing is how to handle the installer bash > script? > how can I run it during installation? Its function is to install python > dependencies, > You can't. In packages you specify other debian package

buster backports question/status

2019-07-10 Thread olivier sallou
Hi, it may be a silly question, but doing some tests on a Debian buster, I got errors trying to install a package from buster-backports. I added to sources.list.d info to set buster-backports but i get this error: E: The value 'buster-backports' is invalid for APT::Default-Release as such a relea

Re: buster backports question/status

2019-07-10 Thread olivier sallou
Le mer. 10 juil. 2019 à 11:08, Andrey Rahmatullin a écrit : > On Wed, Jul 10, 2019 at 10:54:21AM +0200, olivier sallou wrote: > > So, am I doing something wrong? > You tried to install a package (what package? they don't exist) from a > repo that doesn't exist. > I

Re: buster backports question/status

2019-07-10 Thread olivier sallou
Le mer. 10 juil. 2019 à 11:35, Andrey Rahmatullin a écrit : > On Wed, Jul 10, 2019 at 11:29:01AM +0200, olivier sallou wrote: > > I tried a package that is not in backports, it was just for test (for an > > automation tool I use) > > It should fail with a *package not fo

Bug#933390: ITP: python-ftputil -- high level library for python ftp

2019-07-30 Thread olivier sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou X-Debbugs-Cc: debian-devel@lists.debian.org, python-modules-t...@lists.alioth.debian.org * Package name: python-ftputil Version : 3.4 Upstream Author : Stefan Schwarzer * URL : https://ftputil.sschwarzer.net/trac

Re: Should singularity-container make it to next release?

2022-10-12 Thread olivier sallou
Le mer. 12 oct. 2022 à 18:08, Nilesh Patra a écrit : > Hi, > > src:singularity-container was lying around in a bad shape for several years > and had missed 2 debian releases until me and Andreas picked it up again. > It is currently in a reasonably good condition. I was excited to have it in > st

Re: Free open-source ONLYOFFICE Desktop Editors: Compile from source code for Debian repository

2020-05-19 Thread olivier sallou
Le mar. 19 mai 2020 à 16:48, Kseniya Fedoruk a écrit : > Hi team, > > I'm Kseniya from ONLYOFFICE. We are developing open-source office > applications, including the absolutely free ONLYOFFICE Desktop Editors that > provide alternatives to MS Office Word, Excel, and PowerPoint distributed > under

Re: Please do not drop Python 2 modules

2018-04-21 Thread olivier sallou
Le sam. 21 avr. 2018 20:04, Chris Lamb a écrit : > Adrian Bunk wrote: > > > The tip of the iceberg are some recent cases where Python 2 modules > > were dropped that still had reverse dependencies in unstable > > I suspect developers may be reading too much into Lintian output, > reading them as

Re: Please do not drop Python 2 modules

2018-04-24 Thread olivier sallou
Le mer. 25 avr. 2018 01:54, Nicholas D Steeves a écrit : > On Tue, Apr 24, 2018 at 12:29:54AM +0200, Thomas Goirand wrote: > > On 04/21/2018 11:19 PM, Scott Kitterman wrote: > > > Since we are supporting Python2 in the next release, there is no > value> in dumping python-* packages now. Unlike ma

Bug#829565: ITP: python-dictobj -- python library to access dictionary keys as instance attributes

2016-07-04 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: python-dictobj Version : 0.4 Upstream Author : William Grim * URL : https://github.com/grimwm/py-dictobj * License : Apache 2.0 Programming Lang: Python Description : python library