Package: wnpp Severity: wishlist Owner: Olivier Sallou <olivier.sal...@irisa.fr>
* Package name : mapsembler2 Version : 2.0.5 Upstream Author : INRIA * URL : https://colibread.inria.fr/mapsembler2/ * License : CeCILL Programming Lang: C Description : bioinformatics targeted assembly software Mapsembler2 is a targeted assembly software. It takes as input a set of NGS raw reads (fasta or fastq, gzipped or not) and a set of input sequences (starters). It first determines if each starter is read-coherent, e.g. whether reads confirm the presence of each starter in the original sequence. Then for each read-coherent starter, Mapsembler2 outputs its sequence neighborhood as a linear sequence or as a graph, depending on the user choice. Mapsembler2 may be used for (not limited to): · Validate an assembled sequence (input as starter), e.g. from a de Bruijn graph assembly where read-coherence was not enforced. · Checks if a gene (input as starter) has an homolog in a set of reads · Checks if a known enzyme is present in a metagenomic NGS read set. · Enrich unmappable reads by extending them, possibly making them mappable · Checks what happens at the extremities of a contig · Remove contaminants or symbiont reads from a read set -- To UNSUBSCRIBE, email to debian-devel-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20140130084205.5344.82013.report...@debiansid.irisa.fr
