Bug#1091066: r-bioc-genomicfiles: FTBFS: build-dependency not installable: r-api-bioc-3.20

2025-01-13 Thread Michael R. Crusoe
Version: 1.42.0+dfsg-1 OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1091048: r-bioc-biovizbase: FTBFS: build-dependency not installable: r-api-bioc-3.20

2025-01-13 Thread Michael R. Crusoe
Version: 1.54.0-1 OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1092083: mayavi2 ftbfs with Python 3.13 as the default

2025-01-12 Thread Michael R. Crusoe
On Tue, 7 Jan 2025 15:35:10 + Colin Watson wrote: On Sat, Jan 04, 2025 at 12:36:21PM +0100, Matthias Klose wrote: > mayavi2 ftbfs with Python 3.13 as the default Most of this is due to vtk9. I've attached a patch cherry-picked from upstream which fixes this. There's one remaining problem

Bug#1089053: marked as pending in smart-open

2024-12-17 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1089053 in smart-open reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/smart-open/-/commit/1754895405231

Bug#1090091: marked as pending in bedops

2024-12-16 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1090091 in bedops reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/bedops/-/commit/3b157fa541d7135658bd88b2a1e22a781

Bug#1081857: marked as pending in arcp

2024-12-11 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1081857 in arcp reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/arcp/-/commit/63cef95413d17d29299f4f688

Bug#1087826: r-bioc-rhdf5: FTBFS with HDF5 1.14: ‘H5I_REFERENCE’ undeclared (first use in this function)

2024-12-11 Thread Michael R. Crusoe
Control: forwarded -1 https://github.com/grimbough/rhdf5/issues/147 I've confirmed that the latest release of rhdf5 still FTBFS with libhdf4 1.14 and I've informed upstream about the issue. I uploaded the patch, and while it did work for amd64, mips64el, and ppc64el; the build failed for arm64

Bug#1087826: marked as pending in r-bioc-rhdf5

2024-12-11 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1087826 in r-bioc-rhdf5 reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/r-pkg-team/r-bioc-rhdf5/-/commit/29d72ce6e34d61dca97

Bug#1081694: marked as pending in dipy

2024-11-20 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1081694 in dipy reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/dipy/-/commit/7b121c1d68e921c17914dff8d58deaa2980ee

Bug#1081694: marked as pending in dipy

2024-11-19 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1081694 in dipy reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/dipy/-/commit/e9c388f60a81acb432a84c846336d58186d73

Bug#1081694: marked as pending in dipy

2024-11-19 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1081694 in dipy reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/dipy/-/commit/0b50bf91d0b5d6417fc8010bcea6e58c20316

Bug#1084673: marked as pending in jupyter-notebook

2024-11-18 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1084673 in jupyter-notebook reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/jupyter-notebook/-/commit/1

Bug#1084567: marked as pending in invesalius

2024-11-18 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1084567 in invesalius reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/invesalius/-/commit/32b6b848ff7c279f352ad7849

Bug#1081618: FTBFS with multiple supported Python 3 versions

2024-11-18 Thread Michael R. Crusoe
Control: not-found -1 indexed-gzip/1.8.7-3

Bug#1087690: marked as pending in python-skbio

2024-11-18 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1087690 in python-skbio reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/python-skbio/-/commit/1cdaed1edf1d4ec5c9086

Bug#1087690: [Debian-med-packaging] Bug#1087690: FTBFS with Python 3.13: FAILED skbio/util/tests/test_misc.py::TestMiniRegistry::test_everything

2024-11-17 Thread Michael R. Crusoe
Control: forwarded -1 https://github.com/scikit-bio/scikit-bio/commit/45127698e270024bacb670cdd0bd2e4850104b6f Control: tags -1 patch upstream fixed-upstream Should be easy for a team member to apply this patch. I'm away from my computers until at least Tuesday.

Bug#1081692: marked as pending in python-scipy

2024-11-14 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1081692 in python-scipy reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/scipy/-/commit/4d00221d3b9f9717

Bug#1072630: r-cran-dplyr: autopkgtest regression in testing

2024-10-31 Thread Michael R. Crusoe
Control: forwarded -1 https://github.com/tidyverse/dplyr/issues/7099 I have opened an issue upstream: https://github.com/tidyverse/dplyr/issues/7099 OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1086368: marked as pending in pbseqlib

2024-10-31 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1086368 in pbseqlib reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/pbseqlib/-/commit/7b92868842a39dd30d8521bd7bd09

Bug#1078315: marked as pending in rdflib

2024-10-22 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1078315 in rdflib reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/rdflib/-/commit/034bd61b8439fed3c101d

Bug#1081857: arcp: FTBFS: FAIL: test_parse_ni_uri (tests.test_parse.TestParse.test_parse_ni_uri)

2024-10-06 Thread Michael R. Crusoe
Control: forwarded -1 https://github.com/stain/arcp-py/issues/3 I've notified upstream. My guess is that https://github.com/python/cpython/issues/67693 which became https://github.com/python/cpython/commit/387ff96e95b9f8a8cc7e646523ba3175b1350669 in Python 3.12.4 is to blame OpenPGP_signatur

Bug#1082721: [Debian-med-packaging] Bug#1082721: khmer: FTBFS: failing tests

2024-09-25 Thread Michael R. Crusoe
The "khmer" bioinformatics tool is abandoned upstream: https://github.com/dib-lab/khmer/issues/1928 Since no packages in Debian depend on this "khmer" tool, I propose to remove it. Unless there are objections and a fix. On 25/09/2024 00.30, Santiago Vila wrote: Package: src:khmer Version: 3.0

Bug#1061214: Please upgrade to llvm-toolchain-17

2024-09-11 Thread Michael R. Crusoe
Control: forwarded -1 https://github.com/numba/llvmlite/pull/1042 Upstream merged llvm-16 support (https://github.com/numba/llvmlite/pull/1067 ­— not yet released) and are now working on llvm-17 support. OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1081347: [Debian-med-packaging] Bug#1081347: vg: intent to file removal bug

2024-09-10 Thread Michael R. Crusoe
I'd like to upload a version to experimental first, and then it can be removed from unstable/testing. Is that okay? OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1070054: marked as pending in python-cheroot

2024-09-08 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1070054 in python-cheroot reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/python-cheroot/-/commit/fb23c

Bug#1002102: marked as pending in python-dugong

2024-09-07 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1002102 in python-dugong reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/python-dugong/-/commit/b7dec0a

Bug#1079747: marked as pending in macsyfinder

2024-09-07 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1079747 in macsyfinder reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/macsyfinder/-/commit/c34ab3d14cdfcc2628a6d9e

Bug#1075412: marked as pending in python-datrie

2024-09-07 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1075412 in python-datrie reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/python-datrie/-/commit/e7bc420

Bug#1075308: ncl: ftbfs with GCC-14

2024-08-05 Thread Michael R. Crusoe
On Wed, 03 Jul 2024 12:37:41 + Matthias Klose wrote: > Package: src:ncl > Version: 6.6.2.dfsg.1-7 > Severity: important > Tags: sid trixie > User: debian-...@lists.debian.org > Usertags: ftbfs-gcc-14 > > [This bug is targeted to the upcoming trixie release] > > Please keep this issue open in

Bug#1076928: sqlalchemy: FTBFS: failing tests

2024-08-05 Thread Michael R. Crusoe
On Sun, 4 Aug 2024 10:11:53 +0200 "Michael R. Crusoe" wrote: > Control: forwarded -1 https://github.com/python/mypy/issues/17548 > > Upstream is aware of the issue ; I've asked if the tests can be safely skipped > From upstream: the mypy plugin in sqlalchem

Bug#1076928: sqlalchemy: FTBFS: failing tests

2024-08-04 Thread Michael R. Crusoe
Control: forwarded -1 https://github.com/python/mypy/issues/17548 Upstream is aware of the issue ; I've asked if the tests can be safely skipped OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1075453: marked as pending in ruamel.yaml.clib

2024-07-31 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1075453 in ruamel.yaml.clib reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/ruamel.yaml.clib/-/commit/0

Bug#1074586: marked as pending in mayavi2

2024-07-31 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1074586 in mayavi2 reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/mayavi2/-/commit/350f0de1efe2fda59fa

Bug#1076818: marked as pending in mayavi2

2024-07-31 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1076818 in mayavi2 reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/mayavi2/-/commit/350f0de1efe2fda59fa

Bug#1072629: marked as pending in r-cran-dials

2024-07-12 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1072629 in r-cran-dials reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/r-pkg-team/r-cran-dials/-/commit/ca5f5655fe1df93d0aa

Bug#1074528: marked as pending in r-bioc-eir

2024-07-12 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1074528 in r-bioc-eir reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/r-pkg-team/r-bioc-eir/-/commit/dfbf95e2bfbc4a065b9e8f5

Bug#1071344: marked as pending in r-bioc-oligo

2024-07-12 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1071344 in r-bioc-oligo reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/r-pkg-team/r-bioc-oligo/-/commit/67ccf772cadfb19ba3b

Bug#1071353: marked as pending in r-bioc-xvector

2024-07-12 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1071353 in r-bioc-xvector reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/r-pkg-team/r-bioc-xvector/-/commit/b3278f8cc1507df

Bug#1071523: r-cran-spatstat.geom: autopkgtest regression in testing

2024-07-12 Thread Michael R. Crusoe
On Tue, 2 Jul 2024 16:15:26 + Graham Inggs wrote: > Hi Andreas > > > r-cran-spatstat.core was removed from Debian. R-cran-spatstat.geom does > > not depend from this package any more and the autopkgtest in Salsa CI is > > fine[1]. Any hint why it fails in testing would be welcome. > > 82s aut

Bug#1071352: marked as pending in r-bioc-variantannotation

2024-07-12 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1071352 in r-bioc-variantannotation reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/r-pkg-team/r-bioc-variantannotation/-/co

Bug#1071347: marked as pending in r-bioc-rtracklayer

2024-07-11 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1071347 in r-bioc-rtracklayer reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/r-pkg-team/r-bioc-rtracklayer/-/commit/cd36736

Bug#1071351: marked as pending in r-bioc-sparsearray

2024-07-11 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1071351 in r-bioc-sparsearray reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/r-pkg-team/r-bioc-sparsearray/-/commit/e05553d

Bug#1071350: marked as pending in r-bioc-shortread

2024-07-11 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1071350 in r-bioc-shortread reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/r-pkg-team/r-bioc-shortread/-/commit/5f982892534

Bug#1071348: marked as pending in r-bioc-s4arrays

2024-07-11 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1071348 in r-bioc-s4arrays reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/r-pkg-team/r-bioc-s4arrays/-/commit/48b527c32

Bug#1071346: marked as pending in r-bioc-rsamtools

2024-07-11 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1071346 in r-bioc-rsamtools reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/r-pkg-team/r-bioc-rsamtools/-/commit/42a4bdcf3a6

Bug#1071345: marked as pending in r-bioc-rhdf5

2024-07-11 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1071345 in r-bioc-rhdf5 reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/r-pkg-team/r-bioc-rhdf5/-/commit/7a9e2fabbf7abdeb818

Bug#1071342: marked as pending in r-bioc-hilbertvis

2024-07-11 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1071342 in r-bioc-hilbertvis reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/r-pkg-team/r-bioc-hilbertvis/-/commit/e8853435e

Bug#1071349: marked as pending in r-bioc-s4vectors

2024-07-11 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1071349 in r-bioc-s4vectors reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/r-pkg-team/r-bioc-s4vectors/-/commit/d0b3b7299e4

Bug#1070843: marked as pending in r-bioc-s4vectors

2024-07-11 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1070843 in r-bioc-s4vectors reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/r-pkg-team/r-bioc-s4vectors/-/commit/d0b3b7299e4

Bug#1070841: marked as pending in r-bioc-iranges

2024-07-11 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1070841 in r-bioc-iranges reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/r-pkg-team/r-bioc-iranges/-/commit/2e8975a7d9c4fe7

Bug#1071342: marked as pending in r-bioc-hdf5array

2024-07-11 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1071342 in r-bioc-hdf5array reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/r-pkg-team/r-bioc-hdf5array/-/commit/3f7f4a8767c

Bug#1071340: marked as pending in r-bioc-affxparser

2024-07-11 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1071340 in r-bioc-affxparser reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/r-pkg-team/r-bioc-affxparser/-/commit/169649e6d

Bug#1071341: marked as pending in r-bioc-genefilter

2024-07-11 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1071341 in r-bioc-genefilter reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/r-pkg-team/r-bioc-genefilter/-/commit/cc484ad80

Bug#1070842: marked as pending in r-bioc-mutationalpatterns

2024-07-11 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1070842 in r-bioc-mutationalpatterns reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/r-pkg-team/r-bioc-mutationalpatterns/-/

Bug#1074519: marked as pending in graph-tool

2024-07-09 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1074519 in graph-tool reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/graph-tool/-/commit/8241cb8ab0673

Bug#1074519: marked as pending in graph-tool

2024-07-09 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1074519 in graph-tool reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/graph-tool/-/commit/8241cb8ab0673

Bug#1074739: marked as pending in hisat2

2024-07-09 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1074739 in hisat2 reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/hisat2/-/commit/190ff5a5b4b017bbd57f210bb57e7ff89

Bug#1061214: Please upgrade to llvm-toolchain-17

2024-07-06 Thread Michael R. Crusoe
FYI: upstream has a pull request to add llvm 16 support https://github.com/numba/llvmlite/pull/1067 OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1065946: marked as pending in q2-sample-classifier

2024-06-30 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1065946 in q2-sample-classifier reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/q2-sample-classifier/-/commit/54778

Bug#1065945: marked as pending in q2-emperor

2024-06-30 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1065945 in q2-emperor reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/q2-emperor/-/commit/339a9d9005c5783a674a6abfd

Bug#1073321: marked as pending in libsbml

2024-06-26 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1073321 in libsbml reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/libsbml/-/commit/bc8cf1aefde2316f007c1e8a33536a9

Bug#1070988: src:q2-feature-table: fails to migrate to testing for too long: autopkgtest regression

2024-06-26 Thread Michael R. Crusoe
Bump to give us more time OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1071448: marked as pending in dipy

2024-06-21 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1071448 in dipy reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/dipy/-/commit/e8d9beeccae2ff58ce66bef02e1a976effd70

Bug#1071448: marked as pending in dipy

2024-05-22 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1071448 in dipy reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/dipy/-/commit/00094800221d2e7cce0ab0f26852926250ef2

Bug#1068146: marked as pending in dipy

2024-05-10 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1068146 in dipy reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/dipy/-/commit/9f36ad39687b04fe51cbb9f95158c037d9816

Bug#1070515: marked as pending in dipy

2024-05-10 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1070515 in dipy reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/dipy/-/commit/48de65ef11354ed3daa42a046f160bac52cec

Bug#1068960: marked as pending in python-pybedtools

2024-05-03 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1068960 in python-pybedtools reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/python-pybedtools/-/commit/3df77d55b67

Bug#1069724: marked as pending in slurm-wlm

2024-04-30 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1069724 in slurm-wlm reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/hpc-team/slurm-wlm/-/commit/299514679722d1343bd6594bf3b

Bug#1069876: marked as pending in libsbml

2024-04-29 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1069876 in libsbml reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/libsbml/-/commit/6d99ea552c92139739788a722d9303c

Bug#1069030: marked as pending in subread

2024-04-25 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1069030 in subread reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/subread/-/commit/dcce3f3c1dc10acfeac38ae9e3c0449

Bug#1067234: symfit: autopkgtest regression with NumPy 1.26

2024-04-12 Thread Michael R. Crusoe
On Mon, 8 Apr 2024 17:09:33 + Graham Inggs wrote: > Control: tags -1 + patch > > Hi Maintainer > > While asserting that no warnings are raised is a useful test for the > upstream developers, I don't think it makes sense for downstreams. > > I propose to disable the assertion as follows: > > -

Bug#1067294: marked as pending in python-pomegranate

2024-04-12 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1067294 in python-pomegranate reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/python-pomegranate/-/comm

Bug#1067233: marked as pending in python-pomegranate

2024-04-12 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1067233 in python-pomegranate reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/python-pomegranate/-/comm

Bug#1065331: closing 1065331

2024-03-28 Thread Michael R. Crusoe
#confirmed by manual inspection close 1065331 1.10.10+repack-3.2 thanks OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1066781: marked as pending in hickle

2024-03-28 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1066781 in hickle reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/hickle/-/commit/8f016c484ff18c3e959d0

Bug#1067759: marked as pending in python-dnaio

2024-03-27 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1067759 in python-dnaio reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/python-dnaio/-/commit/7749d140760454ca01fd0

Bug#1067500: marked as pending in libbiosoup-dev

2024-03-22 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1067500 in libbiosoup-dev reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/libbiosoup-dev/-/commit/1cc7038e7181f79eb

Bug#1066422: marked as pending in dcmtk

2024-03-19 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1066422 in dcmtk reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/dcmtk/-/commit/7378bd088ea12ea28c1b716bc6a46561597

Bug#1060104: dcmtk: FTBFS on armel: Error: bad immediate value for offset (4100)

2024-03-19 Thread Michael R. Crusoe
7;ve > dropped the graphviz build-depend on those arches too, it can of course > be reintroduced once graphviz become installable again. Thanks, Emanuele; I've incorporated your changes on top of Sébastien Jodogne's very recent upload and will be uploading that shortly. > -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1066569: marked as pending in python-bx

2024-03-14 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1066569 in python-bx reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/python-bx/-/commit/cab6f8584fcb4353b148d54e071

Bug#1066508: marked as pending in staden

2024-03-13 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1066508 in staden reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/staden/-/commit/999a11cacaabe95cf4021dc8bf6daab88

Bug#1065805: marked as pending in mypy

2024-03-11 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1065805 in mypy reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/mypy/-/commit/a650f02c10fa127cbc5d03144

Bug#1062170: glw: NMU diff for 64-bit time_t transition

2024-03-11 Thread Michael R. Crusoe
. I don't think this patch was effective. There is no package rename and the build log from experimental contains the following warning: > dpkg-gencontrol: warning: Provides field of package libglw1-mesa: substitution variable ${t64:Provides} used, but is not defined -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1064996: marked as pending in azure-uamqp-python

2024-03-10 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1064996 in azure-uamqp-python reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/azure-uamqp-python/-/comm

Bug#1064996: marked as pending in azure-uamqp-python

2024-03-10 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1064996 in azure-uamqp-python reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/azure-uamqp-python/-/comm

Bug#1064996: marked as pending in azure-uamqp-python

2024-03-10 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1064996 in azure-uamqp-python reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/azure-uamqp-python/-/comm

Bug#1064996: marked as pending in azure-uamqp-python

2024-03-10 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1064996 in azure-uamqp-python reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/azure-uamqp-python/-/comm

Bug#1061748: ontospy ftbfs with Python 3.12 as default

2024-01-31 Thread Michael R. Crusoe
Dear maintainer, Attached is a patch to fix the Python 3.12 FTBFS. -- Michael R. Crusoe Author: Michael R. Crusoe Date: Wed Jan 31 16:53:11 2024 +0100 d/patches/1006_configparser.patch: Fix Python 3.12 compatability. Closes: #1061748 diff --git a/debian/patches

Bug#1058270: marked as pending in python-schema-salad

2024-01-03 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1058270 in python-schema-salad reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/python-schema-salad/-/co

Bug#1058096: Test suite issues with new version of python3-antlr4 (Was: python3-antlr4: FTBFS: AttributeError: 'TestIntervalSet' object has no attribute 'assertEquals'. Did you mean: 'assertEqual'?)

2023-12-21 Thread Michael R. Crusoe
source tree and further upgrades without matching will likely only make the situation worse. Maybe you can add the above note to debian/README.Source after you reverse the upgrade? -- Michael R. Crusoe OpenPGP_signature.asc Description: OpenPGP digital signature

Bug#1050388: canu: autopkgtest generates unreasonably large artifacts

2023-09-30 Thread Michael R. Crusoe
Hello, this has been fixed. Can you unblock canu from running on the CI infrastructure? Thanks,

Bug#1043383: python-pcre2 now available in sid

2023-09-14 Thread Michael R. Crusoe
dated debmutate has migrated to testing, then this package (python-pcre) can be removed from the archive. Cheers, [0] https://tracker.debian.org/pkg/python-pcre2 [1] https://packages.debian.org/unstable/python3-pcre2 [2] https://salsa.debian.org/jelmer/debmutate/-/merge_requests/15 -- Mich

Bug#1042342: marked as pending in yarl

2023-09-13 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1042342 in yarl reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/yarl/-/commit/56bd15a47b215e9d1d515854e

Bug#1042342: yarl: fix pushed to repo, permission to release?

2023-09-13 Thread Michael R . Crusoe
* Team upload. + * d/patches/square_bracket_handling.patch: cherry-picked from upstream. +Fixes FTBFS. Closes: #1042342 + + -- Michael R. Crusoe Wed, 13 Sep 2023 17:23:01 +0200 + yarl (1.8.2-1) unstable; urgency=medium * New upstream release diff -Nru yarl-1.8.2/debian/patches/se

Bug#1006336: marked as pending in trinityrnaseq

2023-09-12 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1006336 in trinityrnaseq reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/trinityrnaseq/-/commit/2e49a54481ce3fbcc63

Bug#1042318: marked as pending in rich

2023-09-12 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1042318 in rich reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/python-team/packages/rich/-/commit/163bc0ac37b2d97fa1a8c824d

Bug#999936: uwsgi: depends on obsolete pcre3 library

2023-08-22 Thread Michael R. Crusoe
/alioth-lists.debian.net/pipermail/pkg-uwsgi-devel/2023-August/001187.html [1] https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1050177#16 [2] https://qa.debian.org/excuses.php?package=uwsgi Cheers! -- Michael R. Crusoe

Bug#999936: uwsgi: depends on obsolete pcre3 library

2023-08-22 Thread Michael R. Crusoe
/alioth-lists.debian.net/pipermail/pkg-uwsgi-devel/2023-August/001187.html [1] https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1050177#16 [2] https://qa.debian.org/excuses.php?package=uwsgi Cheers! -- Michael R. Crusoe OpenPGP_signature Description: OpenPGP digital signature

Bug#1041078: mongo-cxx-driver-legacy: diff for NMU version 1.1.3-3.2

2023-08-21 Thread Michael R . Crusoe
ecify "-std=c++14" to fix FTBFS with googletest 1.13.0. +Closes: #1041078 + + -- Michael R. Crusoe Mon, 21 Aug 2023 20:39:59 +0200 + mongo-cxx-driver-legacy (1.1.3-3.1) unstable; urgency=medium * Non-maintainer upload. diff -Nru mongo-cxx-driver-legacy-1.1.3/debian/rules m

Bug#1042131: marked as pending in libncl

2023-08-14 Thread Michael R. Crusoe
Control: tag -1 pending Hello, Bug #1042131 in libncl reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/libncl/-/commit/6b73e6331a9f0c2538f5d85b70c96fc6d

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