Re: Please help building bwa on freebsd [nore...@buildd.debian.org: failed kfreebsd-amd64 build of bwa 0.7.12-1]

2015-02-09 Thread Andreas Tille
Hi Jeff, the Makefile just has: ifeq ($(shell uname -s),Linux) LIBS += -lrt endif Could you propose a test that includes BSD reliably? Kind regards Andreas. On Fri, Feb 06, 2015 at 08:28:07AM -0600, Jeff Epler wrote: > The solution may simply be to link with -lrt. > > $ c

Please help building bwa on freebsd [nore...@buildd.debian.org: failed kfreebsd-amd64 build of bwa 0.7.12-1]

2015-02-05 Thread Andreas Tille
Hi, I guess the issue boils down to /«PKGBUILDDIR»/bwashm.c:56: undefined reference to `shm_open' /«PKGBUILDDIR»/bwashm.c:57: undefined reference to `shm_unlink' and I'm sure you guys here are able to find a solution way more quickly than I do. Thanks for any help Andreas. - Forward

Re: Bug#776814: vsearch: FTBFS on kFreeBSD: struct sysinfo unknown

2015-02-01 Thread Andreas Tille
Hi BSD porters, it would be great to have vsearch also on freebsd. Any hint / patch for this problem? Kind regards Andreas. On Sun, Feb 01, 2015 at 10:58:05PM -0500, Aaron M. Ucko wrote: > Source: vsearch > Version: 1.0.7+dfsg-1 > Severity: important > Justification: fails to build fr

Re: Bug#764690: RM: kissplice [armel armhf i386 kfreebsd-i386 mips mipsel powerpc s390x sparc] -- ROM; New version of kissplice is restricted to 64bit architectures

2014-10-10 Thread Andreas Tille
On Fri, Oct 10, 2014 at 03:42:48PM +0200, Andreas Tille wrote: > Hi Steven, > > On Fri, Oct 10, 2014 at 02:36:58PM +0100, Steven Chamberlain wrote: > > On 10/10/14 10:43, Andreas Tille wrote: > > > since the latest version of kisslice only builds on 64 bit architectu

Re: Bug#764690: RM: kissplice [armel armhf i386 kfreebsd-i386 mips mipsel powerpc s390x sparc] -- ROM; New version of kissplice is restricted to 64bit architectures

2014-10-10 Thread Andreas Tille
Hi Steven, On Fri, Oct 10, 2014 at 02:36:58PM +0100, Steven Chamberlain wrote: > On 10/10/14 10:43, Andreas Tille wrote: > > since the latest version of kisslice only builds on 64 bit architectures > > it needs to be removed for other architectures to migrate to testing. > >

Re: Bug#763502: RM: arb [kfreebsd-amd64 kfreebsd-i386] -- ROM; Please remove kfreebsd ports since they are not featuring all needed Build-Depends

2014-09-30 Thread Andreas Tille
Hi Steven, On Tue, Sep 30, 2014 at 05:16:44PM +0100, Steven Chamberlain wrote: > Hi, > > On 16:15, Andreas Tille wrote: > > since the kfreebsd ports are not featuring all Build-Depends of the new > > version of arb these ports should be deleted. > > Since the version

Re: failed kfreebsd-amd64 build of libsbml 5.10.0+dfsg-1

2014-09-16 Thread Andreas Tille
Hi, On Tue, Sep 16, 2014 at 05:45:01PM +, Debian buildds wrote: > * Source package: libsbml > * Version: 5.10.0+dfsg-1 > * Architecture: kfreebsd-amd64 > * State: failed > * Suite: sid > * Builder: fayrfax.debian.org > * Build log: > https://buildd.debian.org/fetch.cgi?pkg=libsbml&arch

Re: Seqan used to build on kfreebsd but does not any more

2014-09-16 Thread Andreas Tille
Hi Steven, On Tue, Sep 16, 2014 at 10:49:08AM +0100, Steven Chamberlain wrote: > > [1] https://buildd.debian.org/status/package.php?p=seqan&suite=jessie > > Huh? According to this it has _never_ built on kfreebsd: > https://buildd.debian.org/status/logs.php?pkg=seqan&arch=kfreebsd-amd64 > > (it

Seqan used to build on kfreebsd but does not any more

2014-09-16 Thread Andreas Tille
Hi, the package seqan currently in testing previously built on all architectures except sparc (even on kfreebsd-*)[1]. I needed to fix some onrelated build issue and now the recent build log on kfreebsd[2] says: ... cd /«BUILDDIR»/seqan-1.4.1+dfsg/obj-x86_64-kfreebsd-gnu/core/demos && /usr/bin/

Re: qiime REMOVED from testing

2014-08-10 Thread Andreas Tille
Hi Steven, On Sun, Aug 10, 2014 at 04:24:54PM +0100, Steven Chamberlain wrote: > On 10/08/14 14:33, Sylvestre Ledru wrote: > > I would like to remove jogl v1 for Jessie and it is the last package > > using it. > > I still think qiime's libjogl-java dependency can be dropped; with > openjdk-7 at

Re: qiime REMOVED from testing

2014-01-22 Thread Andreas Tille
Hi Steven, On Wed, Jan 22, 2014 at 11:45:50AM +, Steven Chamberlain wrote: > On 22/01/14 10:49, Andreas Tille wrote: > > Well, for king we have another problem that it depends from the > > deprecated libjogl-java and should be replaced by libjogl2-java. > > I tried

Re: qiime REMOVED from testing

2014-01-22 Thread Andreas Tille
Hi Steven, On Tue, Jan 21, 2014 at 11:35:33PM +, Steven Chamberlain wrote: > >>> https://buildd.debian.org/status/package.php?p=libjogl-java > > > FastTree.c downloaded successfully. > FastTree built. > Traceback (most recent call last): > File "setup.py", line 183, in

Re: qiime REMOVED from testing

2014-01-21 Thread Andreas Tille
Hi Steven, thanks for your quick response. On Tue, Jan 21, 2014 at 08:44:27PM +, Steven Chamberlain wrote: > On 21/01/14 20:32, Andreas Tille wrote: > > [...] #731190 which boils down to the question why libjogl-java is not > > available on kfreebsd. > > AFAICT that p

Re: qiime REMOVED from testing

2014-01-21 Thread Andreas Tille
architectures that do not have trouble with libjogl-java. Kind regards Andreas. On Tue, Jan 21, 2014 at 08:21:15PM +, Steven Chamberlain wrote: > On 21/01/14 20:10, Niels Thykier wrote: > > On 2014-01-21 19:45, Andreas Tille wrote: > >> I know that qiime has a serious b

Re: Bug#673159: bowtie2: FTBFS[{kfreebsd, hurd}-i386]: error: #error "SSE2 instruction set not enabled"

2012-05-16 Thread Andreas Tille
Hi, could you give some slight hint how to cope with this problem? Many thanks Andreas. On Wed, May 16, 2012 at 04:40:20PM +0200, Christoph Egger wrote: > Package: src:bowtie2 > Version: 2.0.0-beta6-1 > Severity: serious > Tags: sid wheezy > User: debian-bsd@lists.debian.org > Usertags: k

Re: Help: Re: Bug#661659: libhmsbeagle: FTBFS on kfreebsd

2012-02-29 Thread Andreas Tille
Hi, On Wed, Feb 29, 2012 at 01:25:21PM +0100, Xerxes Rånby wrote: > 2012-02-29 08:45, Andreas Tille skrev: > > I think you "simply" meed to use a javase 6 compatible jvm and classlibrary > to compile this code. > The Math.getExponent got added in JDK6. OpenJDK6 can

Help: Re: Bug#661659: libhmsbeagle: FTBFS on kfreebsd

2012-02-29 Thread Andreas Tille
Hi, any hint whether this is rather a problem of JDK on BSD? I personally do not have any idea how to handle this. Kind regards Andreas. On Wed, Feb 29, 2012 at 12:36:21AM +0100, Julien Cristau wrote: > Source: libhmsbeagle > Version: 1.0-4 > Severity: serious > Justification: fails t

Re: Please help with fixing a bug on kfreebsd [Was: Processed: unarchiving 648705]

2012-01-16 Thread Andreas Tille
On Mon, Jan 16, 2012 at 06:43:58PM +0100, Alexander Reichle-Schmehl wrote: > Well, actually it is: > 1) Looking up a server name > 2) ssh to that box > 3) chroot like the welcome message told you So far it's easy - done this in the past. > 4) check build depends > > And maybe: Considering sever

Re: Please help with fixing a bug on kfreebsd [Was: Processed: unarchiving 648705]

2012-01-16 Thread Andreas Tille
Hi Alexander, On Mon, Jan 16, 2012 at 05:58:33PM +0100, Alexander Reichle-Schmehl wrote: > ... > ... and voila! You can indeed fix (or at least investigate further) > these bugs while sitting before a Linux box. Well, what your are summerizing with a "voila" is quite a bit of work and the furthe

Please help with fixing a bug on kfreebsd [Was: Processed: unarchiving 648705]

2012-01-15 Thread Andreas Tille
648705 X-Debian-PR-Package: X-Debian-PR-Message: transcript X-Spam_score: -2.8 Processing commands for cont...@bugs.debian.org: > unarchive 648705 Bug #648705 {Done: Andreas Tille } [src:freediams] freediams: FTBFS(!linux): mkdir: cannot create directory `/qt/': Permission denied Unarch

Re: Bug#621887 closed by Andreas Tille (Bug#621887: fixed in libtecla 1.6.1-4)

2011-12-14 Thread Andreas Tille
Hi, please be so kind and provide a working patch. Currently I'm not able to login to a porter box and test myself. Thanks Andreas. On Wed, Dec 14, 2011 at 02:25:10PM +0100, Cyril Brulebois wrote: > reopen 621887 > found 621887 1.6.1-4 > thanks > > meh.. -- http://fam-tille.de --

Please help: libtecla: FTBFS on kfreebsd-*: mv: cannot stat `debian/tmp/usr/lib/libtecla.la': No such file or directory

2011-12-13 Thread Andreas Tille
Hi BSD-Porters, I would like to get rid of bug #621887. Do you have any hint for a proper fix? Kind regards Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-bsd-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Arc